| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_003359 |
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| Symbol | |
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| ID | 8557092 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | - |
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| Start bp | 1917678 |
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| End bp | 1918733 |
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| Gene Length | 1056 bp |
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| Protein Length | 351 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 646406454 |
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| Product | type III secretion inner membrane protein HrpY |
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| Protein accession | YP_003285984 |
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| Protein GI | 262394130 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4792] Type III secretory pathway, component EscU |
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| TIGRFAM ID | [TIGR00328] flagellar biosynthetic protein FlhB
[TIGR01404] type III secretion protein, YscU/HrpY family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTGCAG AAAAAACAGA GCAACCCACC GCAAAAAAGT TACGCGATGC CAGGCAGAAA
GGTCAGGTAG CCAAAAGCCA AGAAATCGTA TCGTCTGCAT TAATTTTGGC GCTCATAATT
GTACTGTTTG CGTTCGCCGA TTATTACATG TCGCACATCT CAGCGCTTAT TCTCCTACCA
AGTAAGCTTG CTTATCAGGG CTTCCAAGAT GCGCTAGTCG ATGTCGCTAT TGCCATCGCA
AAAGAAATTG CCTATCTACT CGCCCCGATT ATTCTGGTTG CTGCACTCGT CGCCATCTTT
TCCAATATGG GGCAGTTCGG CTTCCTATTT AGTGGTGAAT CCGTTAAACC CGACATCAAA
AAGATCAATC CCGTCGAAGG TGCCAAACGC ATTTTTTCGC TTAAGAGTGT GATTGAGTTT
ATCAAGTCGA TCCTTAAAGT CTCTCTTCTT TCCTGCATTA TCTGGTTGAC CTTACGCGGT
AACATCAACG CTTTGATGCA AATTCCAACT TGCGGGCTAG AATGTGTCCC GACCATTACT
GGCGTCATGA TTAAACAATT AATGATTATC TCTTCGGTAG GTTTCATCGT CATCGCTGCA
GCTGATTTTG CGTACCAAAA ATTTGACCAC ACGAAGAAAC TCAAAATGAG CAAGGACGAA
GTGAAGCGCG AATACAAAGA GATGGAAGGC AGCCCAGAAA TCAAAAGTAA ACGTCGTCAG
CTACACCAAG AGCTACAGGC CTCCAATCAA CGTGAAAATG TTAAACGCTC CAATGTGTTG
GTAACAAACC CAACGCATAT TGCGGTTGGT CTGTACTACA AAAAAGGCGA AACGCCCCTA
CCCGTCATCA CCTTGATGGA AACCGATGCG GTAGCCAAAC GTATGATCGC AATCGCCAAA
GAGGAAGGTG TGCCTGTGAT GCAAAAAGTC CCTCTTGCTC GCGCACTATA CGCGGACGGC
AACGTCGACC AGTACATCCC AAGCGATCTT ATTGAGGCAA CCGCCGAAGT GCTTCGTTGG
CTGGCATCAT TGGAGTCGGA TAAGACGCTG AACTAA
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| Protein sequence | MSAEKTEQPT AKKLRDARQK GQVAKSQEIV SSALILALII VLFAFADYYM SHISALILLP
SKLAYQGFQD ALVDVAIAIA KEIAYLLAPI ILVAALVAIF SNMGQFGFLF SGESVKPDIK
KINPVEGAKR IFSLKSVIEF IKSILKVSLL SCIIWLTLRG NINALMQIPT CGLECVPTIT
GVMIKQLMII SSVGFIVIAA ADFAYQKFDH TKKLKMSKDE VKREYKEMEG SPEIKSKRRQ
LHQELQASNQ RENVKRSNVL VTNPTHIAVG LYYKKGETPL PVITLMETDA VAKRMIAIAK
EEGVPVMQKV PLARALYADG NVDQYIPSDL IEATAEVLRW LASLESDKTL N
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