| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_003354 |
|---|
| Symbol | |
|---|
| ID | 8557087 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | - |
|---|
| Start bp | 1912482 |
|---|
| End bp | 1913225 |
|---|
| Gene Length | 744 bp |
|---|
| Protein Length | 247 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 646406449 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_003285979 |
|---|
| Protein GI | 262394125 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0613909 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAAAAC GCAATGCTTT AATTACAGGT GGCGCTCGCG GAATTGGTGC AGCAACAGCA
AAAGCACTCG CTGCAGATGG TTACCGAGTT TTTATCAACT ACGTAAATAG TGCTGCGGTC
GCGGAAGCGT TAGCTCAGGA AATTCAAAAC GCCGGTGGTG AGGCGTACAC TTTAAAAGCT
GACGTTCGTG ATGACGCACA AATACAAGGG ATGTTCGACA GCATCGCAAA TGAACATGGT
GGCGTTGATG TTCTTGTCTC AAACGCAAAC ATGAGCTTTA CCTCTAAACC TTTCACTGAG
CAGTCGTGGG AAGAGTTTGC ACAAAAGCTA AATGACGAAA TGCACGCTGC ATATCAAACG
GCAAAATTGG CGGTAGAAAA CATGAAAGCC AACCAGTTTG GGCGCTTAAT TTTTATCTCT
AGCACCTTAT CAGAAGCCCC TGCACCAAGC TTTATTGCTC ATGGTAGTGC AAAAGGTGCA
CTTGATAGCT TTAGTAAATA CCTCGCCCAA GAACTTGGTC CCTTCGGGAT TACGTCTAAT
GTCGTTGCTC CGGGCCTTGT AGAAACAGAC GCAACAAAAG GTGCTCCTGA AGAGTTTAAA
GAAACCATTC GAATGTTCAC ACCAACGCAG AAAATTGCCA CACCTGAAGA CGTAGCAAAC
ACCGTGAGCT ACTTGGCAAG TGAAAAAAGC GGACATATCA CGGGCACATA CAATCCAGTA
TGTGGCGGCG CATACCTACC ATAG
|
|---|
| Protein sequence | MTKRNALITG GARGIGAATA KALAADGYRV FINYVNSAAV AEALAQEIQN AGGEAYTLKA
DVRDDAQIQG MFDSIANEHG GVDVLVSNAN MSFTSKPFTE QSWEEFAQKL NDEMHAAYQT
AKLAVENMKA NQFGRLIFIS STLSEAPAPS FIAHGSAKGA LDSFSKYLAQ ELGPFGITSN
VVAPGLVETD ATKGAPEEFK ETIRMFTPTQ KIATPEDVAN TVSYLASEKS GHITGTYNPV
CGGAYLP
|
|---|
| |