| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_003346 |
|---|
| Symbol | |
|---|
| ID | 8557079 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | + |
|---|
| Start bp | 1905309 |
|---|
| End bp | 1905947 |
|---|
| Gene Length | 639 bp |
|---|
| Protein Length | 212 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 646406441 |
|---|
| Product | type III secretion cytoplasmic protein (YscL) |
|---|
| Protein accession | YP_003285971 |
|---|
| Protein GI | 262394117 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1317] Flagellar biosynthesis/type III secretory pathway protein |
|---|
| TIGRFAM ID | [TIGR02499] type III secretion apparatus protein, HrpE/YscL family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.739868 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTTTCAT TTGTTGAAAT AAAAACAGAC AACTTGCAGC TGGCACCTGG CTTAAAGGTG
CTGAAAGCGA AAGATTATGC CAGTTATCTT GATTCGCAAC ACTTAGTTGA AGCCGCGAAC
TCCAAAGCTG AAAGCATAAT TGCTAATGCC CAACAAGCCT ACGAAACTGA AAAACAACGT
GGTTATCAAG ATGGTCTCGC ACAAGCCAAG ATTGAAAATG CGCAAACGAT GGTTGAAACC
CTAGCGCGTT GTAATGATTA CTATCAGCAA GTCGAAGAAA AAATGACAGG CGTGGTGTTA
GAAGCGGTAC GTAAGATCAT CGATACCTTT GATGATGTCG ATACCACGGT GAGCGTCGTG
CGAGAAGCGT TGCAATTGGT GAGCAACCAA AAGCAGGTCA TTTTACATGT CCATCCAGAG
CAGGTTGTTG ATGTGAGGGA AAAGGTGGCT GGTGTATTGA GTGATTACCC TGAAGTCGGT
TACGTTGACG TGGTAGCAGA CGCTCGCTTG AAAAATGGAG GCTGCATTCT GGAAACTGAA
GTCGGGATCA TCGACGCCAG TATTGATGGA CAGCTGCATG CATTAAAGCA AGCGATGGTG
AAGCAACTCA GCGAGCGTAA AATTACGATT CATGAATAA
|
|---|
| Protein sequence | MVSFVEIKTD NLQLAPGLKV LKAKDYASYL DSQHLVEAAN SKAESIIANA QQAYETEKQR
GYQDGLAQAK IENAQTMVET LARCNDYYQQ VEEKMTGVVL EAVRKIIDTF DDVDTTVSVV
REALQLVSNQ KQVILHVHPE QVVDVREKVA GVLSDYPEVG YVDVVADARL KNGGCILETE
VGIIDASIDG QLHALKQAMV KQLSERKITI HE
|
|---|
| |