| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_003329 |
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| Symbol | |
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| ID | 8557062 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | - |
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| Start bp | 1890694 |
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| End bp | 1892454 |
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| Gene Length | 1761 bp |
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| Protein Length | 586 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 646406424 |
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| Product | sigma-54 dependent transcriptional regulator |
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| Protein accession | YP_003285954 |
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| Protein GI | 262394100 |
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| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAACTTC AACACATTAG CGATAACAAC TGGCTTTCTA CGTCATGGAT CCGAAGTGAA
CAGGCGGGTT TAAAACAGCG TCGACGCGCT GAAGATATTC GAGTGACACC GGCGACACTT
CAAGATAGGC GTCACCAACT CAACTTCTTA TTGGAAACCG TCACCCAGTT TGCTCTCCCG
TTGTTTAATC AGCTTTTTGC TCACAGTGAC AGCCGCTTAA TTCTGACGGA TGCCGACGGC
GTTATCATCG GCAGTTGGGG ACAACCTAAG TTCCGCGAAA AGTTGACCGA AATAGCGCTG
AGTTCGGGGG CCTGCTGGCA AGAAAAGGTC AAAGGCACCA ACGCGATTGG GACTGCGATA
GTTGAAGCAA AACCGGTCTC AGTCATCGGC GATCAACACT TCATCCAACA TCATCGTTTT
ATTAGCTGCT CGGCCAATCC TATTTTCGAT CATCTTGGTC ATTTGATTGG CGTGCTAGAT
ATCACCAGCG AACAAAAGAA ACATGACTTC TCAACGCAAG TGCTGGTGCA AAACATGGTC
CAGCAAGTTG AAAATCAATT GCTTAACTTG ATTCCACAAG GGCATATTCG TGTGGATTTG
GCATGTGAGA AAGGCTTACT GAACAGTGGG TGGCAAGGGA TTATCATCGC CAATGAAGAT
GGACAGATTC TTGCGCACAA TCAAGTTGCT TCTCAGCTCC TCGCGCAACA AAACGTCATC
GGGCAATCGC TCGACGACAT TCTTTCTATC CAAAGTGACG AGCACCCTTT CGTGTTCAAA
ACAAAGCCGC TGACCGACAA AAAAGTGAAG TCTCGTTCCG TTACCGCTTC CAATGATCTG
CATTATGGTG ATTCCACTGT CGAGCATTGC TGGCAACAAG CCAATCGTGT TATCGATAAA
GACATCAGCT TACTGATTCT CGGAGAAACT GGGGTTGGTA AAAATGAGTT TGTGAAAGCG
CTACATAAAA ACAGCCAGAG AAAAACGGGG CCGTTGGTTT CCGTCAACTG TGGCGCACTA
CCGAAAGATT TGGTTGAGTC CGAATTGTTT GGCTACGTGG CTGGTGCATT TACTGGCGCA
AACAGCAAAG GCTATCAGGG AAAAATTCGC CAAGCACACA AAGGGATTTT GTTTCTGGAT
GAAATCGCAG ATTTACCCTT GGAAGCTCAA AGCCGTTTAC TGCATGTATT GCAAGATAAA
ACCGTGCTTC CTGTGGGCTC AAACCAAAGT GTTCAAGTAG ATACGCAAAT CATCGCGGCC
ACGCATAAAG ATCTCGAGAA CTTGGTTAGC GAAGGATTGT TCCGTCAAGA CTTATACTAT
CGCCTCAATG GTTTGATCAT CGAATTGCCT CGCTTCGAAG AGCGAGATGA TAAGCAACAA
CTGATCGAGA ATATTCATCG ACGTCACGCT GAATCTGAAC AACAACTTTG CCCTCACCTA
CTTTCTCTGC TGCTTTCTTA CTCTTGGCCA GGAAACTTGC GTGAACTCGA TAGTTTAATC
AAAGTATCCG CATTAATGGC ACAAGGTGAA GAAACGTTAG AGCTCACTCA CGTACCGACT
CACCTGAGTA AGAAACTCAG CCAGGCTCAA GACGTAACAA CCGCTGCCGA ACCCACGTTA
GAACTGCGTG CAACCGTCGA AGACAAACTG CTCAAAACAT ATCAAGCCAA TCAGGGGAAC
ATCAGCAAAA CATCTCGTAT GCTTGGTGTG AGTCGAAATA CAATTTATAG AAAGCTGAAA
AGCCTTGGCA TATTGGGTTA A
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| Protein sequence | MELQHISDNN WLSTSWIRSE QAGLKQRRRA EDIRVTPATL QDRRHQLNFL LETVTQFALP
LFNQLFAHSD SRLILTDADG VIIGSWGQPK FREKLTEIAL SSGACWQEKV KGTNAIGTAI
VEAKPVSVIG DQHFIQHHRF ISCSANPIFD HLGHLIGVLD ITSEQKKHDF STQVLVQNMV
QQVENQLLNL IPQGHIRVDL ACEKGLLNSG WQGIIIANED GQILAHNQVA SQLLAQQNVI
GQSLDDILSI QSDEHPFVFK TKPLTDKKVK SRSVTASNDL HYGDSTVEHC WQQANRVIDK
DISLLILGET GVGKNEFVKA LHKNSQRKTG PLVSVNCGAL PKDLVESELF GYVAGAFTGA
NSKGYQGKIR QAHKGILFLD EIADLPLEAQ SRLLHVLQDK TVLPVGSNQS VQVDTQIIAA
THKDLENLVS EGLFRQDLYY RLNGLIIELP RFEERDDKQQ LIENIHRRHA ESEQQLCPHL
LSLLLSYSWP GNLRELDSLI KVSALMAQGE ETLELTHVPT HLSKKLSQAQ DVTTAAEPTL
ELRATVEDKL LKTYQANQGN ISKTSRMLGV SRNTIYRKLK SLGILG
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