Gene VEA_003118 details

Gene Information

• Locus tag: VEA_003118
• ID: 8556851
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio sp. Ex25
• Kingdom: Bacteria
• Replicon accession: NC_013456
• Strand: +
• Start bp: 1689725
• End bp: 1691629
• Gene Length: 1905 bp
• Protein Length: 634 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 646406213
• Product: cytochrome c-type heme lyase subunit nrfE nitrite reductase complex assembly
• Protein accession: YP_003285743
• Protein GI: 262393889
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG1138] Cytochrome c biogenesis factor
• TIGRFAM ID: [TIGR00353] c-type cytochrome biogenesis protein CcmF

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.204586
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAGGCTG AGCTCGGTTT CTTTTTGTTG ATATTGGTGG CTGTCGCATC GACATGTGCG 
ACGCTGCTGC ATTGGGTTTG CTTTACGCTG CGGAAGAAGG GAGTGTTGCC ACACCAAACC 
GCAACGTCTC ATATTATCAG CTTAGCCTCC TTAGTTTGTT TGGCGCTTTT GATAGTCTGT 
TTTATTCAGG ATAATTTTGC GCTTGAGTAT GTGGTTACAC ACTCGAATAG CCAGTTACCT 
ATCGCGTTTA AGATTGCAGC TGCTTGGGGC GGCCATCAAG GGTCTATGTT GTTTTGGGTC 
GTTACGTTGA GCTTATGGGC GTCTTTTATT GCTATCAAGT CGCCAGTTTG CACTCAATAT 
ACAGGCGATG GCTTGGGTAT CATGAACTTA CTTATTGCTA TTTTCGCTTG GTTTACCCTC 
ACCACGTCTA ATCCTTTTGA GTATGCTCAG ACGCTAGCGT TGGAGGGACG AGATCTCAAT 
CCGATGTTGC AAGATATCGG GCTTATTATT CATCCACCGC TGTTGTATTT GGGTTACGTT 
GGTTATGCCG CGATACTGGC GTTCGCCTTA GCTGCGTTAT TAGCGAAACG ACCTATAAAT 
GAATGGTATG GTGTTGCCCG TAGTGCCGCT TTCTTTGCTT GGGGTACGCT AACAATTGGA 
ATTTTGATCG GTTCTTGGTG GGCATACAAT GAATTAGGTT GGGGCGGGTG GTGGTTTTGG 
GACCCGGTAG AAAACGCGTC TTTGCTGCCT TGGTTAATGG GTACCGCACT ACTGCATAGC 
GGTGTGTTGT CGAAGCGTAA TAAAGGAGCA ATTTGGAGCA CCTACGCATT GGCTTTTGCG 
ACGTTCAGTT TGAGTATTCT CGGCACATTT GTGGTGAGAT CGGGTGTATT AACCTCAGTA 
CACGCGTTTG CGGTTGATCC AACCAAAGGT GTAGTACTTC TTGCTGTTCT TAGCGTTTTG 
GTGATTGTTA CCTTTGGTGT GCTCATTATG CGAGGGCTAC ATATTCCTCG TTTTACGCTC 
GATTCGTTAA TAAGTCGTGC TTACATGGTA TACATCGCTA TTGGACTTCT CGTTGTTTGT 
ATGGCGATTG TTTTCCTCGG TACCTTTTAC CCAATGCTTT ATCAACTGCT TGGCTTGGGT 
AATATATCCG TTGGGGCACC TTACTTTAAA AGCCTCGTTT TTCCCCTTAC ATTACTTGCT 
CTGACCTTTC TCGCCTTTAT GCCCGTGTTG AAGTGGACGA AAGGAGCCAG TCCTCATGCC 
GTTAAAACCA TTGGGTTTGT CGGTATTCAT GTTATTGCGG TTAGCGCTAT TTTCGTTTTT 
GCTACTAAAG AGCTTCATAT AACGACTTTG ATTACTCTGG TATTAGCGAC GTGGGTAGTG 
GTTTCTCATG TGCTATTGCT GTTTTGTGCA GAAAACAAGA GCAAATTAAT GCCTATGTTT 
CTTGCTCATG TTGGCTTTGC GTTGGGTGCA AGCGGGGCAG TATTTAATAG TGACTATTCG 
TATGAATACA ACTTACGGGT AGAGCCTGGT AGCTCGTATC AAAAAGCGGG TATCACCGTT 
GATTATCATG GAATTGAATG GTTAGTTGGG CCGAACTACA CCGCAGAACA GGGAAGTGTT 
GATCTTTATT TGGAGAGCGG TAAGGCGTTG AACTTTCAAC CCGAGAAACG GCATTACCCT 
GTACGCGTGA TGAATATGAC CGAGCCCGCT ATTCGATCAC TATGGCATGG AGACTACTAC 
ATCACTTTGG GTGACAAGCT CGACAACAGC GCCTACGCAA TTAAAGTGCA ATATCGCGCG 
GGCATATGGT GGATATGGTT TGGTGGCGCT TTAATCGTAA TAAGTGCTTT GGGGAGTATG 
ATGAATCTAA GGGGAAAAGG TAATGAGATC GAAAAATACG CTTAA 

 

Protein sequence

MEAELGFFLL ILVAVASTCA TLLHWVCFTL RKKGVLPHQT ATSHIISLAS LVCLALLIVC 
FIQDNFALEY VVTHSNSQLP IAFKIAAAWG GHQGSMLFWV VTLSLWASFI AIKSPVCTQY 
TGDGLGIMNL LIAIFAWFTL TTSNPFEYAQ TLALEGRDLN PMLQDIGLII HPPLLYLGYV 
GYAAILAFAL AALLAKRPIN EWYGVARSAA FFAWGTLTIG ILIGSWWAYN ELGWGGWWFW 
DPVENASLLP WLMGTALLHS GVLSKRNKGA IWSTYALAFA TFSLSILGTF VVRSGVLTSV 
HAFAVDPTKG VVLLAVLSVL VIVTFGVLIM RGLHIPRFTL DSLISRAYMV YIAIGLLVVC 
MAIVFLGTFY PMLYQLLGLG NISVGAPYFK SLVFPLTLLA LTFLAFMPVL KWTKGASPHA 
VKTIGFVGIH VIAVSAIFVF ATKELHITTL ITLVLATWVV VSHVLLLFCA ENKSKLMPMF 
LAHVGFALGA SGAVFNSDYS YEYNLRVEPG SSYQKAGITV DYHGIEWLVG PNYTAEQGSV 
DLYLESGKAL NFQPEKRHYP VRVMNMTEPA IRSLWHGDYY ITLGDKLDNS AYAIKVQYRA 
GIWWIWFGGA LIVISALGSM MNLRGKGNEI EKYA