| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_003047 |
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| Symbol | |
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| ID | 8556776 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | + |
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| Start bp | 1599751 |
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| End bp | 1601022 |
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| Gene Length | 1272 bp |
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| Protein Length | 423 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 646406138 |
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| Product | type I secretion TolC precursor |
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| Protein accession | YP_003285672 |
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| Protein GI | 262393818 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTTAAGC TGCAACGATC AAAAATCGCC TTTGCATTGT TGGCTGCCAC GCTCAGTTTG
CCTACCTATG CAATTTCTAT TGAACAAGCT TGGCAACAAG CAAAGCATAA CGATCCAAAT
TACGAAAAGG CGAAAATCGG CGTCCAGCTT GGCGAGGTTG GCGTACAGAG TAGCCGCAGT
GCGTTATTGC CGGGTTTAAG TGCCAGTGCG TCAGCGGATT GGAATGAGTC CTCAAGCCAT
TCCAACAGTT ACGGCGCGAC CTTATCTCAA ACTATTTGGG ATAGCAGTTT GTGGTCGGAA
CTGGATCAAG CGAATGCCAA TTATCTCAAA GCACAGTTAG AGCTATCTCA ATCGCATAAC
GAGCTTGCGC AGAAGTTGCT CACCGCTTAC CTAGATGTGG CAAGCGCACA GGGCGACCTC
AAATTGGCGC AGTCCAAGCT GGAGGAGGGG AAGGAACTTC TCAACATCAT TGAGAAACGC
TATCGAGCAG GCAAAGTGAA GTCGGTTGAT GTTGAAGAGA TGCGAGCGAA TCAAGTCTCT
GAGCAAGCAA GTATCCTCAA TGCAAAAGCC GATCTCGAAG TGAAAAAAGC AGAGCTTGCG
GCGTTAATTA ATCAAATGCC GGAGAGTGTC GACCAAATTC GAACGGATTC TTTAATTCAG
CCTCCGATGC TGGTGGACTC TCAGGAGCAA TGGCTAAAGC TGGCGAAAGA CAGCAGTCCA
GAGCTGCTGG TGGCGGCGCA GATGGTGAAG GCGAGCGAGT TCGCGAAAGA TTCAGCTAAA
GGTGGATACT ACCCGACAGT CAAAGGCAGT GTGGGCTACA GCGATGGTGA TAATCGTTCA
AACGGCGAGT TTAACGCTGG GATTAGTTTG AGTTTGCCGA TTGACCTCAA TGGTGCAGTG
CGAGCGAAAG TGGACGAAGC ATCGTTGAAC ATTTTAAGTG CCAAGCAAGA TATGCGTAGA
GTGGAAATTG ATATTCAGAA ACGAGTTATT CAGCAGTTTA CGCAGGTCGA TATCAACTGG
AATCAAGTTT TGATAGCGAA CGAGCTGGTT GAGTCGCGCG CTAGAGTGTT GCAAAGCAAA
GAGAAACTTT ACGACGCTGG CCTGCTTGAA GTGTCGGAAG TTATCAGCGC ACACAACAGC
TTGTTTGAGG CGAAAAACAG TCTGCAAACC AACTTGTACA GCTACTGGCG TAAGAGAATC
GGCTTACTGC AAACCGCAGG GAAACTCGAT GACGATACCA TGGCGTTGAT CTCTCGAGCT
TTTCATTCAT GA
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| Protein sequence | MVKLQRSKIA FALLAATLSL PTYAISIEQA WQQAKHNDPN YEKAKIGVQL GEVGVQSSRS
ALLPGLSASA SADWNESSSH SNSYGATLSQ TIWDSSLWSE LDQANANYLK AQLELSQSHN
ELAQKLLTAY LDVASAQGDL KLAQSKLEEG KELLNIIEKR YRAGKVKSVD VEEMRANQVS
EQASILNAKA DLEVKKAELA ALINQMPESV DQIRTDSLIQ PPMLVDSQEQ WLKLAKDSSP
ELLVAAQMVK ASEFAKDSAK GGYYPTVKGS VGYSDGDNRS NGEFNAGISL SLPIDLNGAV
RAKVDEASLN ILSAKQDMRR VEIDIQKRVI QQFTQVDINW NQVLIANELV ESRARVLQSK
EKLYDAGLLE VSEVISAHNS LFEAKNSLQT NLYSYWRKRI GLLQTAGKLD DDTMALISRA
FHS
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