Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VEA_002988 |
Symbol | |
ID | 8556718 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio sp. Ex25 |
Kingdom | Bacteria |
Replicon accession | NC_013456 |
Strand | - |
Start bp | 1535130 |
End bp | 1538204 |
Gene Length | 3075 bp |
Protein Length | 1024 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 646406081 |
Product | ribonuclease E |
Protein accession | YP_003285615 |
Protein GI | 262393761 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1530] Ribonucleases G and E |
TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTAATTA ACGCAACTCA AAAAGAAGAG TTGCGTGTCG CTCTGGTTGA TGGCCAGCGA CTTTTCGATC TTGATATCGA GAGTCCAGGT CATGAATCTA AAAAAGCGAA TATCTACAAA GGACGTATCA CACGTATCGA ACCAAGCTTA GAAGCCGCAT TTGTTGATTA CGGCGCCGAG CGTCACGGTT TCCTCCCTCT CAAAGAAATT GCCCGCGAAT ATTTCCCTGA AGGTTACACC TACCAAGGTC GTCCAAGCAT CAAAGAAGTG CTAACGGAAG GCCAAGAAGT TATCGTTCAA GTGGAAAAAG AAGAACGTGG AAGCAAGGGC GCAGCTCTTA CTACTTTCAT TTCTCTTGCT GGTAGTTACC TTGTTCTTAT GCCTAACAAC CCTCGTGCTG GCGGTATTTC TCGCCGAATC GAAGGTGACG AGCGTACTCA ACTAAAAGCC GCATTAAGTA CTTTGGAACT GCCTCAGGGC ATGGGCCTAA TCGTACGTAC TGCTGGCGTT GGCAAGAGTG CCGAAGAACT TGAGTGGGAT TTGAATGTAC TACTTAACCA CTGGGGTGCA ATCAAAGGTG CAGCGGACTC TAACCCTGCT CCATTCTTAA TCCACCAAGA AAGTAACGTT ATCGTTCGTG CAATCCGTGA CTATTTACGT CGTGATATTG GCGAAATCTT AATTGACAGC AACACCATCT ACGAACGTGC AAAAGAGCAC ATTCAATTGG TGCGCCCTGA TTTCCTTAAC CGCGTTAAGA AATATGAAGG CGAAGTTCCA CTATTCAGCC ACTACCAAAT CGAAAGCCAA ATTGAATCAG CTTTCCAACG TGAAGTGCGT CTGCCATCTG GTGGTTCTAT TGTTATTGAC CCAACCGAAG CACTAACGTC TATCGATATC AACTCTGCTC GTGCAACCAA GGGCGGCGAT ATTGAAGAAA CAGCTCTAAA CACGAACCTA GAAGCAGCCG ACGAAATTGC TCGCCAGTTA CGTCTACGTG ACTTGGGTGG CTTAGTGGTT ATCGACTTTA TCGATATGAC ACCTGTTCGC CACCAACGAG AAGTAGAAAA CCGTCTACGT GAAGCCGTTC GTCTTGATCG CGCTCGTGTA CAAATCGGTC GTATTTCTCG CTTTGGTTTG TTGGAGATGT CACGTCAACG TTTAAGCCCT TCTCTAGCAG AAGCAAGCCA CCACATCTGT CCTCGCTGTA GCGGTACTGG AGTCGTTCGC GACAACGAAT CTCTAGCACT TTCTGTGCTT CGTTTAATCG AAGAGGAAGC ACTGAAAGAC AATACAGCGC AAGTTCTCGC AGTTGTACCT GTGCCAATCG CTTCTTACTT GTTGAACGAA AAACGTCGTT CAGTTAACCA TATCGAACGC ATTCAAGAAG TGAAGATTAC GGTTGTTCCA AACTCTGACA TGGAAACGCC GCACTTCGAA GTTATCCGTG TTCGTGAAGG TGAAGAGTTC GATCTGATTT CTTACCTACT TCCTAAAAAA CTGGAAGCAA TGAAAGAAGC GGAAGGTAAA GAGCCAGCGG AAGTTGACGT AAAACCTAAA CGAATCGAAG AACCTGTTCT TAAAGGCTTT GCGGCTCCTT CTCAAACGGC ACCTGCACCA GCAGCTAAAC CTGCCCCTGA GGCGAAGAAG AAAGAACAGA AAGTTGAACA AGAAGAAAAA CCTGGACTGT TCAGCCGTTT GTTTAAAGCA CTTGGTAGTT TCCTATTCGG CGGTTCTGAA GAGGTAAAAG AAGAACCGAA ACCTCAGGAA GAGAAAAAGC CAAATCGCGA TAATCGACGC AACAAACGTG ATCGCAATGA TCGTCGTCGC AATAACAACC AACGCGATAA TCGTGAGAAC CGCGACAATC GTGATAACCG TGATAACCGA CGTCGTCGTA AGCCTCGTGA TGAGCAAGCG AATGAGCAAA ACGAAGCGCA ACAACAAACC AATAAACAGC AAAACCGCAA CCAAAAGCGT AAGCCTAAAG CTCAACAAGC AGACAAAGCC CAAGAGCAAA AAGCAAATGC AAAAGTAGCG GAAAAAGGCC TGCAGCTAGC GGCAGAAGCT CGAACTGAAA CAAAACCAGA AGAGAGCAAA CCAAAGCAAC AAAACGCGAA AGCAGAAAAA GTGAAGGAGC GTCGCCAACG TCGCAAACTG AACAAGTCTG TACGCGTTAA AGACCAAGAA GCGGTTGAGA AGAAAACAGA AGAAACGGCG GTTAAGACTC AAGAAATGGT TGAAACCAAA GTTGAGAAGC CAACAGAAGC AGCGGTAGAA ACACAGCAAG ACAACAAGCA AGCAGAGTCT AAGCAACGTC GTAACCGTCG TTCGCCACGT CACCTGCGTG CAAGCGGTCA GCGCCGTCGC CGTGGTCGCG ATCGCCGTCC TAACCCGTTC CGCCTGCGTA AAGGTGGTGT AGCTTCTCCT GAGATGGCTA TGGGTAAAGT AATGCCACGC TACATTCCGA AACCAGCACC TAAGAAAGAA GAGCAAGTTA AGGAAGAAGC AGTAGCAGCA GTACCTACAA TGCAAGGTGG TTTTGCTTGC CCAGAAATGG CTATGGGTAA AGTGATTATT CGCCGCGAGC AACCTGTTGT AACAGAAGCA CCAGTTGTTG AATCAAAGGT TCAAGAAACA GTTGAAGCGA AAGTTGAATC TCCAGCAGTA GAAGCACCTG TTGTGGAAGC AGTAATCGCA GAAAAAACTG AATCGGCAGT AGTAGAAACA GCCTCTGTAG AGCCTATCGT TGAAACTCCT GCAACTGAAC ATGCTGAACC GGTTGATGCC ATTGTAGAAA CGGCACCAGC TGAAGAGCCT GTGGTTGAAG CAGCAAAAGA GATTGCAGCC GAAGCGCCAG TAGCTAAACC AGAGCCTAAA GTCGAAGCCA TTAAAGTTGC TGCTAAGCTA AACGCTAGCG CACCGATGAC AAAAGCACCT GGCCCTCAAG AGCTACGCGA AATCACTGTT GCAGCAGCGC CGTTCAAAAC CGAACGTTAC CAAGCTAAAG GTGCGGGTAG CCAAGTGGCT AAAAACCGCG CATCGGCAGA GATGACAAAG CCTAACTTTA ACTAG
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Protein sequence | MLINATQKEE LRVALVDGQR LFDLDIESPG HESKKANIYK GRITRIEPSL EAAFVDYGAE RHGFLPLKEI AREYFPEGYT YQGRPSIKEV LTEGQEVIVQ VEKEERGSKG AALTTFISLA GSYLVLMPNN PRAGGISRRI EGDERTQLKA ALSTLELPQG MGLIVRTAGV GKSAEELEWD LNVLLNHWGA IKGAADSNPA PFLIHQESNV IVRAIRDYLR RDIGEILIDS NTIYERAKEH IQLVRPDFLN RVKKYEGEVP LFSHYQIESQ IESAFQREVR LPSGGSIVID PTEALTSIDI NSARATKGGD IEETALNTNL EAADEIARQL RLRDLGGLVV IDFIDMTPVR HQREVENRLR EAVRLDRARV QIGRISRFGL LEMSRQRLSP SLAEASHHIC PRCSGTGVVR DNESLALSVL RLIEEEALKD NTAQVLAVVP VPIASYLLNE KRRSVNHIER IQEVKITVVP NSDMETPHFE VIRVREGEEF DLISYLLPKK LEAMKEAEGK EPAEVDVKPK RIEEPVLKGF AAPSQTAPAP AAKPAPEAKK KEQKVEQEEK PGLFSRLFKA LGSFLFGGSE EVKEEPKPQE EKKPNRDNRR NKRDRNDRRR NNNQRDNREN RDNRDNRDNR RRRKPRDEQA NEQNEAQQQT NKQQNRNQKR KPKAQQADKA QEQKANAKVA EKGLQLAAEA RTETKPEESK PKQQNAKAEK VKERRQRRKL NKSVRVKDQE AVEKKTEETA VKTQEMVETK VEKPTEAAVE TQQDNKQAES KQRRNRRSPR HLRASGQRRR RGRDRRPNPF RLRKGGVASP EMAMGKVMPR YIPKPAPKKE EQVKEEAVAA VPTMQGGFAC PEMAMGKVII RREQPVVTEA PVVESKVQET VEAKVESPAV EAPVVEAVIA EKTESAVVET ASVEPIVETP ATEHAEPVDA IVETAPAEEP VVEAAKEIAA EAPVAKPEPK VEAIKVAAKL NASAPMTKAP GPQELREITV AAAPFKTERY QAKGAGSQVA KNRASAEMTK PNFN
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