Gene VEA_002963 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVEA_002963 
Symbol 
ID8556693 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio sp. Ex25 
KingdomBacteria 
Replicon accessionNC_013456 
Strand
Start bp1503416 
End bp1504411 
Gene Length996 bp 
Protein Length331 aa 
Translation table11 
GC content47% 
IMG OID646406056 
Productoligopeptide transport ATP-binding protein OppF 
Protein accessionYP_003285590 
Protein GI262393736 
COG category[E] Amino acid transport and metabolism 
COG ID[COG4608] ABC-type oligopeptide transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACGCAG TAGATAAAAA GCTAATTCTG GACATTTCAG AGCTGAAAGT TCACTTCAGC 
ATTGCGTCAA AATCGGCATG GCCTTGGTCA AAGCCTTCAA GCCTAAAAGC GGTTGATGGG
GTGAACGTTC GACTATACGA AGGGGAAACG CTTGGTGTAG TAGGTGAGTC AGGTTGTGGT
AAATCGACGT TTGCGCGCGC CATCATCGGT CTTGTTGAAG CGACGGATGG AGAAGTAGTT
TGGTTGGGTC AAGATCTAAC TAAGATGAAA GACGTCCAAC GTCGTGAAAC GCGTAAAGAA
ATCCAAATGA TTTTCCAAGA TCCTTTGGCT TCTCTTAACC CACGTATGAC GGTTGGCGAC
ATTATTGCTG AGCCTCTTGA AACGTTCTAT CCAGAACTGT CTAAGCAGGA AGTGAAAGAC
CGCGTTAAAG AGATGATGGC GAAAGTTGGC CTATTACCTA ACGTTATTAA CCGTTACCCA
CACGAGTTCT CAGGTGGTCA GTGTCAGCGT ATCGGGATTG CGCGTGCGCT TATCCTTAAG
CCTAAGATGA TCATTTGTGA CGAGCCAGTA TCGGCGCTTG ATGTATCTAT TCAAGCTCAG
GTTGTTAACC TGCTTAAAGA GATTCAAAAA GAACTAGGCC TTTCTCTGGT ATTCATTGCG
CATGACTTGT CAGTGGTTAA ACATATCTCA GATCGTGTTT TGGTCATGTA CTTGGGTAAT
GCTGTCGAAC TCGGTGAGGC GGAGGCGCTG TTTGCTGATC CTAAGCACCC ATATACACGC
GCATTGATGT CAGCGGTTCC GATTCCGGAC CCGAACATTG AGCGCAGTAA GAAAATCCAA
ATGCTGGAAG GCGACCTTCC TTCGCCGATC AGTCCACCAT CGGGTTGTGT GTTCCGCACT
CGTTGCCCAC AAGCAACCGA AGAGTGTGCG AAGACGAAGC CAACGATTCA AGGTAACGAC
GTTCACGCGG TATCTTGTTT ACACGTTAGT GTATAA
 
Protein sequence
MNAVDKKLIL DISELKVHFS IASKSAWPWS KPSSLKAVDG VNVRLYEGET LGVVGESGCG 
KSTFARAIIG LVEATDGEVV WLGQDLTKMK DVQRRETRKE IQMIFQDPLA SLNPRMTVGD
IIAEPLETFY PELSKQEVKD RVKEMMAKVG LLPNVINRYP HEFSGGQCQR IGIARALILK
PKMIICDEPV SALDVSIQAQ VVNLLKEIQK ELGLSLVFIA HDLSVVKHIS DRVLVMYLGN
AVELGEAEAL FADPKHPYTR ALMSAVPIPD PNIERSKKIQ MLEGDLPSPI SPPSGCVFRT
RCPQATEECA KTKPTIQGND VHAVSCLHVS V