Gene VEA_002889 details

Gene Information

• Locus tag: VEA_002889
• ID: 8556617
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio sp. Ex25
• Kingdom: Bacteria
• Replicon accession: NC_013456
• Strand: +
• Start bp: 1420440
• End bp: 1427690
• Gene Length: 7251 bp
• Protein Length: 2416 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 646405980
• Product: Rhs family protein
• Protein accession: YP_003285516
• Protein GI: 262393662
• TIGRFAM ID: [TIGR01643] YD repeat (two copies)

Plasmid Coverage information

• Num covering plasmid clones: 0
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAATT GGCTAGGTGT AATCTTTGCG GGGTTGTCTA TTCCTGCAAT AGCACAAACG 
ATCGGTACTT TGCCCGGAGA GCTATCGATC GACAAGGGTG TCGCATATTA TCAAATACCG 
ATAACACTAC CAGCTGGGAA AGGGGGTATA GCTCCTAATC TAGCGCTAAG CTACTCAAGC 
TCTGGGCCCG TAAGGTCTGA ACTAGGGGGC GGCTTCTCGC TTAGCGGCCT GTCTGCCATA 
AAAAGGTGTG GTGACCATCA AGCGATTGAA GGGCAAGTAA GCTCAGTGAC TTATAGTTTT 
ACTGATAATT TTTGCTTAAA TGGCACGCGT TTAATTGGTG AAAAAGGTGT AACTGGCAAA 
GATGGCTCTG AATACCGTTT ACACGTAGAT AACCAGTCAA AAATTATTCT GAATGGTGAT 
TCAAATGCAG CATCAAGTTA CTTCATTAAG CATGATAAAA GCGGTGCTGT TGAAGAATAT 
CATTATAATA ACCTTTCGAA GAGTTGGTTG TTGAGCTCCT ATAAAAGCAA CCCAAGTTCA 
GAGAGTATCT CTTATAACTA TGATAATTTA GGCCAGATAT CATCGATACA TTACGATTCT 
TTCAGTGTTG TCTTTAATTA TCTTCCTATC AATAGTGGTA TTCCTACAAA ACATTATAAG 
ATAGACGGAA ATGTTCATAG GTATGAATCA AAGCTGACAA GAATTGATAT AAGTATAAAC 
AATAAAATAA AAAATTATTA CCGACTGGGT TATAAGGAGG TAATCGAAGG TCTTGGTGCC 
TCCTTTATTG ATAGTATTAC ATATTGCGAT GCGAAGGATG ATTGTTTACC TGCCACTCAA 
TTTGATTGGA AGGAACATAA AAGCCCAATG AAAGGCCAGA TATTCTTTGA TGAGAAAATC 
GCTAATATTG ACTTAGGTCA TTGGGGGAAA AACACTATCC CTAGTGATTG GGGAAATGCT 
AATAGAAGTT GGTGGGTTGA TATTGATGGG AATAGCGTAG GTGACTTCTG TAAGACTGAT 
GCCCATGGAT TTACTTGCCA CATGGATGTG TCTCAATCTA GTGTCGCTCG CACCTACAAT 
ATAAGTCAGT GGGGAGACGC TCATAGCCAT TGGTGGTTAG ATATAAATGG TGATAGTAAA 
ACAGAGTTTT GTCGTATAGA TGATGGCAAA TTACTTTGTG ATGCTTTTCA TTCAAATAAT 
ACAACGACAC AACTTTCTTG GATTGTGTTG AACTCCGGGA TGAAGGACTT CCGTTGGTGG 
AGGGACATGG ATGGTAATGG CGTACCAGAG TACTGTCGTC GTATAGGTGA TGAACTTTTA 
TGCAGTGAAC CCAAAGAAGA TGGCGAGTGG TCTGATTCAG TACACGTTCG TGGCATAGAA 
TGGGGGCAAA TTAAAGACAC TTATTGGACC GATATAAATG GCGATGGTGG TAGTGAACTT 
TGTTCTGTCG AAGGGCAAAC GATTAAGTGC ACGTCTTTTT CGGGTAAATA TCTAGTTCAA 
AAAAATATTA GTTTTCCAAT TAGTTCTGTA GGTCAGCCAG ATTCCCGTTG GTGGGTGGAT 
GTGAATGGCG ATAATGCCAT CGACTTTTGT CGCATGACGG ATAACGATGC TAGCAAAACA 
GTTAATCTAA CTTGTTCTCT TGGCTCTCTT GGTTCGTTGC ATAAATTCGA AGACGATATA 
GAGTTTGTTA AAAGTGATGA TTGGACAGGC GAGCTCGGGA GCGTAGATAA ACGTTGGTGG 
CTCGATTTGG ATCAGGATGG TGTTATAGAT TTCTGCCGTG GCGTCGGTAA CAAGGTCCAA 
TGTGTCAACG CTTATAAGTA CCAATATGAA TTTGATGTTG ATAATTGGGG GACTGGTTTT 
AACTCATTCA TTGATTTGAA CCAAGATGGT AAGTTTGAGC TCTGTAAGAA GAGATCTAAC 
CGTCTAGAAT GTCAAACCAC TGCTCAGAGC AACCATTCTC CATTATTGCT TGAAAAAGTG 
ACAAATGGTC TAGGACATAT TTCTTCAGTA TGGTTTGGCC CATACGGTAA TCACACGCCT 
TCTGACTCTT TTAAGTCTGA TGATTCTGGT CTTTTTAACT TACCAGGCTC TTTCCCTGTA 
GCTTATCGTC TTGAGACCGA CAACGGACAT GGAAAAAATA ACTACTTATT CCAATATGGT 
CCTGCAAAGC GCTCTAAAGA TGGTCTAAAA CACAATGGTT TCGAATGGAT TCGACAGCGA 
AGCTTTGTTA ATGAAAAAAA CACTCTCAAC CAAGAGTTTC AATTTAATAC AGAATTTCCT 
TACTCAGGCA CATTGAAAAA GCAAACCGAC TATTTTGCGA ATGGACAAAA GTGGTTAAAT 
GGTTGCGGTG ATTGTAGATC GGATGACTTT TGGAACTTTA GAGAGCTTAG TAAAAGTTCC 
GAATCTGAAT TTGAATTTAA GACGCTAAAA AAAGAGTTCA GTGCTACGCA AATCGTTAAA 
AGTTTCCAAC AGCTGTCTTC TGCAGCAGAT AAGCATTTAA AGGGTTATAA GCTTATCGAA 
TACAAAGATC AAAAATACGC AGCAAGCGCT GACAAATTTG TTCCTGTTGG CGGTTCAACA 
CTGATGCCAA TCATGATTCC TGCCACAGAG TTTTCTTTGG TTGAGGAGCG AACAACGGTA 
CTAGAAGATC AAATACCAGT GTGGCTCATG ACGCCAGTAT CGGATGATTT GAATCGCGAG 
CTATCTGCAT TATCTGGTCA AGCTCGATTC GTGAAGGCGA TCACAGCTAC AGAATACGAT 
GAAATCGTCG AATGGGTTGA AACTCCAACA GTCGGTAACA CCTTTGCATT TTATACCTCA 
GAACGAAAGG ACTACCAATA CTCTGAAAGT GGTGAACTTC TTAGTACAGT TACCGTAGAG 
CAGAGTGATG TCGATACATT TCTGAATGTT GGTAAAATTA CAACGACAAC AACCGGACTT 
AATCCGGTCA CCGGTTATAG TGACACGTTT GTTGAAATTA CCCAAAACGC GTATGTAAAT 
AAGGTAGATT CTTGGTTAAT CGGGTTGCTC GATTCGACTA AAACAACTTA CATTCACAGC 
GATGGTAGCA GGATCTCTCA AGAGGCTACT TTTAAATATG ACAATGAAAC CGGTTTGTTG 
CGTGAGCACA CGACGCTACC AAATACGCCA TATTCCATGG TTACCATCAA AGAGCGAGAT 
GGAAACGGTA TTGTTACTAA AGAAAGCGTT ACTGCGACTA ACGGGGGGAG ATTAGAAACT 
CGCTCTACTT CCTTTAAACA TTCCTACGTA GGGAATAGTG TTGTAACCGA GGTGACAAAC 
CCTGCTGGAC ACGTCTCGTC TCAAACTGTT GATCTATTGT CAGGGCTAAT TGTAAAAGTT 
GATGAAAACG GTCTTTCTAC TTCGACAAAA CTCGATGGTT TTGGTAGAGA AGCCGAGGTG 
TCTGTTGTAA ACACTTCTGT AAAATCTGAG ATCAGTCGCT TTCCTGCGGG AGACAGTCGT 
TGCTTATTCA ATGTTAACAA TGCGAGTTAC TGTGTTATCA ATCAATCGAA AAACTCAGGC 
AAGAAGATCA GCTTTTTTGA CTTTTTAGAA AGAGAAGTGA GAAGAGCCTC TTTATCGGTA 
AACGGTAAGT GGGTTTTCGT TGATTCTGGC TATGATGCAT TTGGCAATTT AGTCTCTGCT 
TCAAAACCTT ATTACCAAGG TGATATTCCT CAGTATATTG TCACTCAGTA CGACAAATTA 
GGAAGAGTCA TTTCGATAAA AGAACCTGGT CCTGCAGGTA AAGAAGACAG CTGGATTTCT 
TATTCTTACG GTCCTTTCAC AGTAACCAAA ACGGACGCCA AAGGTCGAGT TTCTAAAACT 
TTTACCAACG TATTAGGTTG GGAGATTGAG AAACAGGAGC CGAATGGTGG CAAAGTTATC 
TACGACTTCT ATGCCAATGG AATGTTGAAA TCTGCTATTG CGTCAGAAGG AGAAACAGTT 
CGTACCGAGT ACAATATTCA AGGCAATAAA TCTTTAGTAG ATGATCCAGA TCTAGGTTTG 
TGGACTTATG AATATGACGG TTTTGGTCAA CTCGTTAATC AAACTGATGC TAAAGGTCAA 
AGTACTCATT TCGCTTACGA CAACTTAGGT CGCAAAGTCG CTGAGAAAGT AGAATCCAAA 
GTTAAGCAAA GTGAGAAAGA AGTAACACAC ATCACCACAA AGGCATGGTT TTACGACAAA 
GTGGATGGAC GCGTCTGGTT AGGAGGGCTA CTAAAAGCAA CTGTAGATGG AGAACTGGTT 
AAGAACTACT TCTACAACGG TCTGGGTTTA CTGAGACGCG AAGAGACGAT TACTCCAGAG 
CACACATTCG CACGAGATTT AGAGTATGAC TCTAACGGGC AACTAATTCG AGAACATAGA 
CCTAACAAGT TTACTCTAAA CTACACCCGA GATGCTTTAA CGGGTATTAA TACGGAAGTC 
TGGGGAGATA TTTCTCAAGC TCAAGTTAAT TACACTGCAG CTGAATATCG CAACGTGATT 
GAGCCTCTAA TCAATGAAGC CCTAAATAAA GCGAAAGATT ATTTAGTTAA AGTAAAAGAT 
TTACAAGAGC AGCAATTCTT CTACAAGCGA CGCAAGGAAG AGTATCAGAA GCTTAAAGAT 
CAGCTTATCT CATTTGACGG AGTGGCTGAA AATGAGGCAT TTGCGCGCCA AATGAGGGCG 
GAGCTACATA CTAGACCATT ACATATGTAC ACAAATGAAT ATGGCGAGCG TTATTTCAAA 
GTTTCCCCAA GGACAGTGGT GGTCTCTGGA AATGGTTTGA TACCTGTAGT TCAGCAACCT 
AACTTCCATC TTAAGATTGA AGGTAACTTA CTAAGAGAGG TAAGCCTTGA TGAATGGGCT 
GCTTTTGAAG CAGGTTTGAT CAATCAAAAC CAAACTGCGT ACTACGGCAA CTATTCTGAT 
GGCGGAAGTA TAAGTTTAGC GACATTTGAT TTGGAAAGGG ACGATCCGCT ATATGATCAA 
AGAATGCGTC AAATGTTTGA TGAACTCAAT TCACTCTCAA AAGAAGTAGA TAGGCTTGAA 
TATGTGCAAG ATACAACGGA ATTACGTGTA AATAGCTATC TTTTAGCTGC AGAACAACTA 
GTAAAATTAG TTAAGCAAGT CAAGCTTGTT TCACAGAAGT ACAATAACCT AGCTGTGGAA 
TCTGAAAATG AGTCAGATGC ACTACGTTCC CTCAAAGATG ATAACCCAGC TGATGGACGG 
ATTTCGTACT GGAAGCTCAA CGATATGGAC GCCGAAGGTC GAATTACATC AGAGGTTTTA 
GGAAATGGCT TAGTTAATAG TTTCGATTAT CATGAGAGTA ATGGTCAACT ACTCAATATA 
TACACTAGGC AAGGTTCCAA GCTGCTGCGT GGCGTTCATT ACACCTACGA CAGAATGGAT 
AATGTGCAGA GTCGCCGAGA TCTTGTTAAT GATATACAAG AAAATTTCTA CTACGACGAT 
CAAGACCGAC TAACAGACTA CCATTTGTCT GGTATTGGTG CAGCACATGC TGAGAATCCG 
TTATTTAACA AAAAGTATTC CATGTCTTAT GCTGCGAATG GCAATATCAA ATATAAGTCT 
GACGTTGGTC ATTATATCTA CGCAGATCCG TTACACAAGC ATGCGGTAAC TCAAGCTGGG 
GATAATACAT ATCGCTACGA TGAAAACGGA AATATGCTAT CTGGCGGAGG GAGAACAATT 
GAATGGACAG GCTTCAACAA GCCTTCACGT ATTCAGCAAG AACAAGGCTG GGTTGACTTT 
AAATATGATG AGTCGAATCA GCGAGTCAGC AAGCGTAGTA GCGATGGAAG CAGAACTTGG 
TACCTCGGTA AGTCCTACGA GTTAAAAGAG CTAGCATCCG GGGACATTCA ACAAACTCAG 
TACATTTATG CTGGGAATGG TCTGGTCGCT ATAAATGTGA ACTCATTGAA GACTGATGGA 
CAAGGAAGCT ATGCATCTGT AGATCGCCAA ATTCGTTATA GCCATACAGA TGCGCTTAAA 
TCGGTTGATA TGGTAAGTGA TATGTGGGGG AATATTGTTG ACCGTAAGCT ATATGACCCT 
TGGGGCAAAG AGAGAGCGTT TACTTGGAAA GCTGACAATG TGTTGTTGCC TCAACCTGTA 
TTGTTGAATC GTGCATTTAC AGGGCATGAG ATGCTTAATG AAGTTGACTT AATCCATATG 
AACGGTCGTT TATATGATGC AACATTAGCA CGATTTATCA GCGCTGACGT TTACATACAA 
GCTCCTGATA ATAGTCAATC ATTCAATCGA TACAGCTACG TTCTCAATAA TCCTCTTAAA 
TACAACGATC CTTCTGGCCA TTTCTTTAAG AGAATTAAAA AAGAACTTAA ACGTCAATGG 
AACGACGTAC GAGAGTTCAC CTCTCGTTAC TCGAGAGAAA TCGTCGGTAT CGTTGTGGGG 
ATCGTCGTCA CTGTCGCCAG TGGTGGTACG TACAGTGTGT TGCTAGCCGA TGCTGGTGCA 
AGTTTCTTCT CTGCAGGGTC TCTTACTAAT GCCATTGCTG CCGGTGCACT TGGTGGCGCC 
ACTGGTGGGG CTGTAACCGG TGGGATCATT AGTGAAAGCT GGAACGGAGT TGGCAAAGGG 
GCTGCGATTG GTGCAATTAC AGGCGCTATC GGAGGTTACA ATAGCTTTAA GCCAACGAGA 
GGATTTGCAC ATGCAGCCAC GAAAGTAAGT GTCGCAGCAG CTGGTGGTTG TGCTACAGGT 
GAGATCGCGG GTGGTTCATG TGAAAAAGGT GCAAAATTTG CCGCATTATC ACAAGTTGTT 
GTGCTTAGCT TTGAGTACAT GAAAAATGTT ACAGATCGCT ATAAGATTAG GTCTTGTGAA 
GTTGCTAACT CAGGCTCAGT CTGTAAGAAC AATGTTGATG GTGAGCTATT GACTGACGGT 
ACTCGTGGTA GCAAGCCTAT GTGGAACGAG AAACCGACGC AAACTTTGTT CACGGAAGGA 
GGTATGGCGC GAGAGGCTTC TGGCGCACAT CTTTACAATG AGAATGGGCT CATAGGACGT 
TTCGTTAACA AAGTATCTAA AGTTCATGAT TACTTTAACT CTGATGTTTC GAGATTGTTT 
GGCTTCCATG GATATGACCA GATAACTGGA TTTTGGTTAG AAGGAGGGAC AATGTATAAC 
CACTTGTTTC AAGCTTATAG TTTCTCTGGG ATGCTGCCTG CTGCAATATA TACAGGTGGT 
GCACTAGTCG CACCATATCC TATTTATCCT TATTCGCAGT TAGGGGATTA G 

 

Protein sequence

MKNWLGVIFA GLSIPAIAQT IGTLPGELSI DKGVAYYQIP ITLPAGKGGI APNLALSYSS 
SGPVRSELGG GFSLSGLSAI KRCGDHQAIE GQVSSVTYSF TDNFCLNGTR LIGEKGVTGK 
DGSEYRLHVD NQSKIILNGD SNAASSYFIK HDKSGAVEEY HYNNLSKSWL LSSYKSNPSS 
ESISYNYDNL GQISSIHYDS FSVVFNYLPI NSGIPTKHYK IDGNVHRYES KLTRIDISIN 
NKIKNYYRLG YKEVIEGLGA SFIDSITYCD AKDDCLPATQ FDWKEHKSPM KGQIFFDEKI 
ANIDLGHWGK NTIPSDWGNA NRSWWVDIDG NSVGDFCKTD AHGFTCHMDV SQSSVARTYN 
ISQWGDAHSH WWLDINGDSK TEFCRIDDGK LLCDAFHSNN TTTQLSWIVL NSGMKDFRWW 
RDMDGNGVPE YCRRIGDELL CSEPKEDGEW SDSVHVRGIE WGQIKDTYWT DINGDGGSEL 
CSVEGQTIKC TSFSGKYLVQ KNISFPISSV GQPDSRWWVD VNGDNAIDFC RMTDNDASKT 
VNLTCSLGSL GSLHKFEDDI EFVKSDDWTG ELGSVDKRWW LDLDQDGVID FCRGVGNKVQ 
CVNAYKYQYE FDVDNWGTGF NSFIDLNQDG KFELCKKRSN RLECQTTAQS NHSPLLLEKV 
TNGLGHISSV WFGPYGNHTP SDSFKSDDSG LFNLPGSFPV AYRLETDNGH GKNNYLFQYG 
PAKRSKDGLK HNGFEWIRQR SFVNEKNTLN QEFQFNTEFP YSGTLKKQTD YFANGQKWLN 
GCGDCRSDDF WNFRELSKSS ESEFEFKTLK KEFSATQIVK SFQQLSSAAD KHLKGYKLIE 
YKDQKYAASA DKFVPVGGST LMPIMIPATE FSLVEERTTV LEDQIPVWLM TPVSDDLNRE 
LSALSGQARF VKAITATEYD EIVEWVETPT VGNTFAFYTS ERKDYQYSES GELLSTVTVE 
QSDVDTFLNV GKITTTTTGL NPVTGYSDTF VEITQNAYVN KVDSWLIGLL DSTKTTYIHS 
DGSRISQEAT FKYDNETGLL REHTTLPNTP YSMVTIKERD GNGIVTKESV TATNGGRLET 
RSTSFKHSYV GNSVVTEVTN PAGHVSSQTV DLLSGLIVKV DENGLSTSTK LDGFGREAEV 
SVVNTSVKSE ISRFPAGDSR CLFNVNNASY CVINQSKNSG KKISFFDFLE REVRRASLSV 
NGKWVFVDSG YDAFGNLVSA SKPYYQGDIP QYIVTQYDKL GRVISIKEPG PAGKEDSWIS 
YSYGPFTVTK TDAKGRVSKT FTNVLGWEIE KQEPNGGKVI YDFYANGMLK SAIASEGETV 
RTEYNIQGNK SLVDDPDLGL WTYEYDGFGQ LVNQTDAKGQ STHFAYDNLG RKVAEKVESK 
VKQSEKEVTH ITTKAWFYDK VDGRVWLGGL LKATVDGELV KNYFYNGLGL LRREETITPE 
HTFARDLEYD SNGQLIREHR PNKFTLNYTR DALTGINTEV WGDISQAQVN YTAAEYRNVI 
EPLINEALNK AKDYLVKVKD LQEQQFFYKR RKEEYQKLKD QLISFDGVAE NEAFARQMRA 
ELHTRPLHMY TNEYGERYFK VSPRTVVVSG NGLIPVVQQP NFHLKIEGNL LREVSLDEWA 
AFEAGLINQN QTAYYGNYSD GGSISLATFD LERDDPLYDQ RMRQMFDELN SLSKEVDRLE 
YVQDTTELRV NSYLLAAEQL VKLVKQVKLV SQKYNNLAVE SENESDALRS LKDDNPADGR 
ISYWKLNDMD AEGRITSEVL GNGLVNSFDY HESNGQLLNI YTRQGSKLLR GVHYTYDRMD 
NVQSRRDLVN DIQENFYYDD QDRLTDYHLS GIGAAHAENP LFNKKYSMSY AANGNIKYKS 
DVGHYIYADP LHKHAVTQAG DNTYRYDENG NMLSGGGRTI EWTGFNKPSR IQQEQGWVDF 
KYDESNQRVS KRSSDGSRTW YLGKSYELKE LASGDIQQTQ YIYAGNGLVA INVNSLKTDG 
QGSYASVDRQ IRYSHTDALK SVDMVSDMWG NIVDRKLYDP WGKERAFTWK ADNVLLPQPV 
LLNRAFTGHE MLNEVDLIHM NGRLYDATLA RFISADVYIQ APDNSQSFNR YSYVLNNPLK 
YNDPSGHFFK RIKKELKRQW NDVREFTSRY SREIVGIVVG IVVTVASGGT YSVLLADAGA 
SFFSAGSLTN AIAAGALGGA TGGAVTGGII SESWNGVGKG AAIGAITGAI GGYNSFKPTR 
GFAHAATKVS VAAAGGCATG EIAGGSCEKG AKFAALSQVV VLSFEYMKNV TDRYKIRSCE 
VANSGSVCKN NVDGELLTDG TRGSKPMWNE KPTQTLFTEG GMAREASGAH LYNENGLIGR 
FVNKVSKVHD YFNSDVSRLF GFHGYDQITG FWLEGGTMYN HLFQAYSFSG MLPAAIYTGG 
ALVAPYPIYP YSQLGD