| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_002873 |
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| Symbol | |
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| ID | 8556601 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | + |
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| Start bp | 1402122 |
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| End bp | 1406486 |
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| Gene Length | 4365 bp |
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| Protein Length | 1454 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 646405964 |
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| Product | AAA ATPase |
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| Protein accession | YP_003285500 |
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| Protein GI | 262393646 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3170] Tfp pilus assembly protein FimV |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR03504] FimV C-terminal domain
[TIGR03505] FimV N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTCAAA ATTATAAGCG TTTGTTAGCA GCCCTTGTGT TGATGAGCGC GACTCAGACA
TCATCAGTGG TTCAAGCCGA AGGAATTCGT CTTGTTGGAC CGTCTGGTGA AGTGCAATCA
TCTCCGAGCT ATGCTGAAGA TATTGAGCGA GCATTACCTG CTCCTCCTGC AAACACTCAG
CCGTCACGTT TCTTTGGTCC GACTGGTGAA AATCAAACAC TATGGTCGAT CGCTTCAGAA
TTACGACCTT CACGCGGTGT TACCGTTCAA CAAACGCTTC TTGCCATTTA TCGAATTAAC
CCTCAAGCGT TTGAGAACCA AAACATTCAT GAGTTGATCC CAGGGAGTCG ACTACGAGTA
CCGTCTCTAG AGCAAGTGCA AAGCGCGACT ACAGAGCAAG CTGTTGCGAT TATGAAGGCG
CACGAGGCTA AGTTAAAACA GCCGAAGCCG ACAAATAGAG CCACGCCAGC GCAACGCGTC
ACCGAGCAAC CAAAGCCACA AATAAAAGTA GAACCCAAGC CTGTTGCTCC TAAACCAGAA
ACCACTGTAG CTGCGGAACC AAAACCGGTT CAAAAAACAA TACCAGTTAT TCCTGCGCCA
CCTGTGAACA CCTCTCCGCA GGGTGAAAAG CAGGTCAGTG CGTTAAAAGA CAAACTTCAA
GGCTCACAAA GTGAATTAGA GTCATTGGAA GAGAAGAACC ATCGTCTTCG CTTAATGTTG
TCAGAAGTGC AAAGCGAAGT TGAAACCTTG AAAAATGAGC TGAATGACGA AGAACGCATT
CGCTCGGAAG TCGAGAAACT GCTTGCTGAA GAGCGCCAGC GCCTTGCTGA GCAACAACGC
ATGCAGCCAA GTACGATTGA CAAGATTTTG TCTAATGGTT GGCTTGTCGG CTTAGCGGCG
CTTATTCCAG GTGCATTGCT GGCACTGTTG GTTGTGATGT TGCTTGGTCG CCGTTCTAAA
AACAAAGAGG AAGAGTCTGC TGAGCAATCG CCGCAGGAAA CCGATCCATT AGCTGCGCCA
ATTGGTTTAG CGGCGACGGA CGAGCTGGAT GAAGAACTCA CACTTGATGA TGAGTTGTTC
GCAGATGAAG ATATTAATAC TCAGGCTACA CAAGAAGAGA AGCCAGATTT AGAAGAAGAC
GTCTTTGCCA ACCTTGACGA TGAAGAACTG GATTTCAACC TAGAAGGGGA CGATGACCCA
TTTGCGGGTA TCGGTGATGA CGGCGACCTA GATGTTGGTC TGGATGAGTT TGAGTCATCG
AACAATGGTA TCCAAGTTAA CGGCGAAGAA AAAGCGCTTG GTTTAGAAGA GATGGAGCGA
GCCTTAGATG AGGTTGCTCC AGAACTAGAA GTGCTCGATG ACGATGAGGC TGGCTTCGAT
CTTTCAGATG ATACGAACGA GAAAGCAGAC TCGCTTTCAG ACGACGCATT TGCGGAACTA
CTTGCAGCAG ATGAGCCGTC AGAAGAGTTA CCAAGTGACA CTGTCGATCA GGATATGCTT
GATGACTTGT TTGCGGAACT TGGCAATGAC GACTTCGACC TAGATACCGA TGAACCTGAA
CTAAAACAGC CCGTATCGGA TGATGATTTC AGCGCAGGAG AGGCATCTGA TGACGATATC
GATAAGCTAT TAGCTCAATA CGAGCAGCCT GTTACTGAGT CGACAGAAGT TGAAGGTGAC
GTCAGCGAAG ACGCCGTTCT AGATGAAAAC AGTACGGACT TACTCGATGA ACTGATCGAT
TTTGACGAAG ATGAAACAGA CGACGAGTTT GACCCACTGA ATGAGCTAGA AGCACTCTCT
GGTTTTGAAG GTGATGACTC GATTGAAGAG TTAGATGCAG ATAGCACAGA TTTACTGGAT
GAACTCATTG ATGACGTCAC ATCCGAACTG GATGAAGAGA CAGGAACTGA GACAGAGTTA
GACCCGTTTG ATGATCTGAT TCGAGAGGAC GAAAGCCCTG CACAGAATAA ATCGGAAGAG
GAAGAGTTAC TCGCTTCACT TGGTTTTGGC GAACCAGACG GCGAAGAAAA GCCATCTTCA
ATAGCTGAGT CAGAGCCAAC CCATGAAGAG CCGGAAATTG AGTCTGGTTT GGACATCGAT
GCTTTATTAA GTGACAGTCA ACCAGATCTG CAACAAACAG CGCCAGAGCA ACCATTAACC
GAGCCAGAAA CTGCTTCAGA GCCATTTAGC AGCGATGAGT TTCTTGGTGA TTTAGAGGAC
CTCTCACCAG AGAACGATCC TTTAATGAGC GAGCTAGACG ACTTGTTTGA GTCAGACAGT
GAAGAGCTTC AGCCTACAGA GCAAGAAAAA GCGGACTTTT CTGCTGAACT GGATGCACTA
TTTGATACTG AAGATGATTT AACGCAACAA CAAGTTGAAG AGCCGCAAGC TGAGATAGAG
GAATCTTCGC CACAACAAGA AGAGGATGCC AATTCTAAGT CAACGCAAGA TGCATCAGTA
GAGCCTGATG CTAAAGTGCC GCCTCAAGTT GATACAGAAG AAGACGCCCC AGCGTTCACT
CCGACACCAA ATACAGTAGA AAATGAATTT GGTGTTCCAC AAGAAGAAGA TTGGCTACTG
GATGAGCCTG AACTAGAAAG TGAAACTCAA CCAGAACAAG AACAAAACTC GGGTAACAAA
AGTGAGCCAG AAAGTTCAGA ACTAGCATCA GAAACTGATT CGGCCACCAA TGCAGAAGAA
GAGTTCGATT TTGATGAACT CGATCTACCA GAGTTCAGTG AAGAAGACGC ACTGGCGTCC
ATGGCGGACG AACCTGCGTT TGATGAACCA GAGCCTGTCG AGCCTGAGCG CTCTGAAGCT
GATTCGGCCA CTGAAGCAGA AGATGAATTC AATTTTGATG AACTCGATCT ACCAGAGTTT
AGCGAAGAGG ACGCATTGGC GTCTATGGCG GGCGAACCTG CGTTAGATGA CCCAGAATCT
ATCGAGCCTG AGCGCTCTGA AGCTGAGTCG GCGACTGAAG CAGAAGAAGA GTTCGATTTC
GATGAACTCG AACTGCCAGA GTTTAGTGAA GAGGATGCAT TGGCGTCTAT GGCGGGCGAA
CCTGCGTTAG ATGACCCAGA TCGCTCTGAA GCTGAGTCGG CGACTGAAGC AGAAGAAGAG
TTCGATTTCG ATGAACTCGA ACTGCTAGAG TTTAGTGAAG AGGATGCATT GGCGTCCATG
GCAGGCGAAC CTACGTTAGA TGAACCAGAA TCTATCGAAC CTGAGCGCTC TGAAGCTGAG
TCGGCGACTG AAGCAGAAGA AGAGTTCGAT TTCGACGAAC TCGAACTGCC AGAGTTCAGC
GAAGAGGACG CATTGGCGTC CATGGCAGGC GAACCTACGT TAGATGAACC AGAATCTATC
GAGCCTGAGC GCTCTGAAGC TGAGTCGGCG ACTGAAGCAG AAGAAGAGTT CGATTTCGAT
GAACTCGAAC TGCCAGAATT CAGTGAAGAA GACGCCTTGG CATCTATGGA AGAAGAGCCA
GAATTACCGA GTTCTGAAAC CGCAGATATA GAACCAATCT CCGGTGAGGA TGAAGAGCTA
AGTTTTGACG ACCAAGACCT TCCTGAGTTC AATGAGGAAG ATGTTCTCGC ATCAATGAAT
GAGAGTGCGC CAGAGACTCC TAATGTTGAA GCTGAGACAT CGAGACCAAC TCTTCAAGCC
GATAACGATC ATGATGCTTT GTTTGAAGTT TTTGCGCAGC AAAACGGTTT TGATACTGAA
CCAGAAGTGC AGCCAACGGC GACAGAGGGT GAGCCGCTAA GTGACTTAGA TGATGAATCT
TCAATGGCTA ACCTTCTTGC TGAAGACGCA AGTTCAGAGG TATTTGAAGG TCAGTTAGAC
AGTGACACCA TCGCAAGCGC AGGTATGGAT TTTGAAACCA TGCTTGATGT TGGAGATGAT
TGGGATGGCT TTAAACCAGC TGCCGATAGC GTAAGTTCTA CGGAAGATGT GCCTGAGGAC
CAGCGTGATG TTTGGAATTC GAGTGACGCA CTAAGTCAGC CAGAGATCGC GCAAGAAAAC
TGGGCAGAGC AAAGCAACTT GGATGACTTC GACCCGAAGA AAAATCAATT TATGACGATT
GATGAATTGA TGGCTCAGGT CGATAAAGAA GGTGGTGAGT TCGAAGAGGA AGATCTGAAG
CTTGATGTCG GATTGAACGA GTTTCCAGAT GTTATCGGTG AGATCGGCGA TGTTGACGTA
GATAGCAACG CTGAAGCTGC TGGAAAACTG GACCTTGCTA AAATCTATCT CGAGATGAAC
GATTCTCAAG GGGCGATAAA ATTACTAGAA GAGGCGATTG TTTACGGTGA AGATGATATT
CGCCGCGAAG CAAAGAGCTT GATTGATGCC ATTAATGGCC GATAA
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| Protein sequence | MRQNYKRLLA ALVLMSATQT SSVVQAEGIR LVGPSGEVQS SPSYAEDIER ALPAPPANTQ
PSRFFGPTGE NQTLWSIASE LRPSRGVTVQ QTLLAIYRIN PQAFENQNIH ELIPGSRLRV
PSLEQVQSAT TEQAVAIMKA HEAKLKQPKP TNRATPAQRV TEQPKPQIKV EPKPVAPKPE
TTVAAEPKPV QKTIPVIPAP PVNTSPQGEK QVSALKDKLQ GSQSELESLE EKNHRLRLML
SEVQSEVETL KNELNDEERI RSEVEKLLAE ERQRLAEQQR MQPSTIDKIL SNGWLVGLAA
LIPGALLALL VVMLLGRRSK NKEEESAEQS PQETDPLAAP IGLAATDELD EELTLDDELF
ADEDINTQAT QEEKPDLEED VFANLDDEEL DFNLEGDDDP FAGIGDDGDL DVGLDEFESS
NNGIQVNGEE KALGLEEMER ALDEVAPELE VLDDDEAGFD LSDDTNEKAD SLSDDAFAEL
LAADEPSEEL PSDTVDQDML DDLFAELGND DFDLDTDEPE LKQPVSDDDF SAGEASDDDI
DKLLAQYEQP VTESTEVEGD VSEDAVLDEN STDLLDELID FDEDETDDEF DPLNELEALS
GFEGDDSIEE LDADSTDLLD ELIDDVTSEL DEETGTETEL DPFDDLIRED ESPAQNKSEE
EELLASLGFG EPDGEEKPSS IAESEPTHEE PEIESGLDID ALLSDSQPDL QQTAPEQPLT
EPETASEPFS SDEFLGDLED LSPENDPLMS ELDDLFESDS EELQPTEQEK ADFSAELDAL
FDTEDDLTQQ QVEEPQAEIE ESSPQQEEDA NSKSTQDASV EPDAKVPPQV DTEEDAPAFT
PTPNTVENEF GVPQEEDWLL DEPELESETQ PEQEQNSGNK SEPESSELAS ETDSATNAEE
EFDFDELDLP EFSEEDALAS MADEPAFDEP EPVEPERSEA DSATEAEDEF NFDELDLPEF
SEEDALASMA GEPALDDPES IEPERSEAES ATEAEEEFDF DELELPEFSE EDALASMAGE
PALDDPDRSE AESATEAEEE FDFDELELLE FSEEDALASM AGEPTLDEPE SIEPERSEAE
SATEAEEEFD FDELELPEFS EEDALASMAG EPTLDEPESI EPERSEAESA TEAEEEFDFD
ELELPEFSEE DALASMEEEP ELPSSETADI EPISGEDEEL SFDDQDLPEF NEEDVLASMN
ESAPETPNVE AETSRPTLQA DNDHDALFEV FAQQNGFDTE PEVQPTATEG EPLSDLDDES
SMANLLAEDA SSEVFEGQLD SDTIASAGMD FETMLDVGDD WDGFKPAADS VSSTEDVPED
QRDVWNSSDA LSQPEIAQEN WAEQSNLDDF DPKKNQFMTI DELMAQVDKE GGEFEEEDLK
LDVGLNEFPD VIGEIGDVDV DSNAEAAGKL DLAKIYLEMN DSQGAIKLLE EAIVYGEDDI
RREAKSLIDA INGR
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