Gene VEA_002872 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVEA_002872 
Symbol 
ID8556600 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio sp. Ex25 
KingdomBacteria 
Replicon accessionNC_013456 
Strand
Start bp1400910 
End bp1401923 
Gene Length1014 bp 
Protein Length337 aa 
Translation table11 
GC content46% 
IMG OID646405963 
Productaspartate-semialdehyde dehydrogenase 
Protein accessionYP_003285499 
Protein GI262393645 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0136] Aspartate-semialdehyde dehydrogenase 
TIGRFAM ID[TIGR01296] aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0797453 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCCAGC AATATAATGT TGCCATTTTA GGTGCGACCG GTGCGGTCGG TGAAACAATT 
TTAGAAGTGC TTCAAGAACG TAAATTCCCA GTGGGTGACA TTCACTTATT GGCAAGTGAG
CGTAGCGAAG GCAAGACTTA TCGCTTTAAT GGCAAAACGG TTCGTGTACA GAACGTTGAA
GAGTTTGATT GGTCTCAAGC TCATATTGCG TTGTTCTCTG CTGGTGGTGA GCTATCTGAA
AAATGGGCGC CAATCGCGGC AGATGAAGGT GTTATCGTTA TCGACAACAC TTCACACTTC
CGTTATGAGT ACGACATTCC TCTTGTTGTG CCAGAAGTAA ACCCAGAAGC GATTGCAGAG
TTTCGTAACC GTAACATCAT CGCGAACCCA AACTGTTCGA CCATTCAAAT GCTGGTGGCA
CTAAAACCAA TTCACGATGC AGTGGGTATT GAGCGTATTA ACGTATCTAC ATACCAATCC
GTATCTGGTG CGGGTAAAGC GGGCATTGAC GAACTAGCAG GTCAAACGGC TAAGCTTCTA
AACGGTCTGC CAGCGGATAA GAAGCAATTC TCTCAACAGA TTGCGTTTAA CTGTATTCCG
CAAATCGATC AGATGATGGA AAATGGCTAC ACCAAAGAAG AAATGAAAAT GGTGTGGGAA
ACACAGAAGA TCTTTAACGA TCCATCAATC ACAGTAAACC CAACGTGTGT GCGTGTGCCG
GTATTCTATG GTCATGCTGA AGCGCTTCAC ATTGAGACTC GCTCTCCAAT CGATGCACAA
GAAGTTGTTA ACTTGCTTGA GCAAACAGAA GGCATTGAAG TCTTCCACGG TGATGACTTC
CCGACACAAG TGCGTGATGC GGGCGGTAAA GATCATGTTA TGGTTGGTCG AATCCGCAAC
GATATCAGCC ACCATAGTGG TGTAAACTTG TGGGTTGTGG CGGATAACGT GCGTAAAGGC
GCAGCAACTA ACGCGGTACA AATCGCTGAA GTTCTGATCC GCGATTACTA CTAA
 
Protein sequence
MSQQYNVAIL GATGAVGETI LEVLQERKFP VGDIHLLASE RSEGKTYRFN GKTVRVQNVE 
EFDWSQAHIA LFSAGGELSE KWAPIAADEG VIVIDNTSHF RYEYDIPLVV PEVNPEAIAE
FRNRNIIANP NCSTIQMLVA LKPIHDAVGI ERINVSTYQS VSGAGKAGID ELAGQTAKLL
NGLPADKKQF SQQIAFNCIP QIDQMMENGY TKEEMKMVWE TQKIFNDPSI TVNPTCVRVP
VFYGHAEALH IETRSPIDAQ EVVNLLEQTE GIEVFHGDDF PTQVRDAGGK DHVMVGRIRN
DISHHSGVNL WVVADNVRKG AATNAVQIAE VLIRDYY