| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_002846 |
|---|
| Symbol | |
|---|
| ID | 8556574 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | + |
|---|
| Start bp | 1372555 |
|---|
| End bp | 1374531 |
|---|
| Gene Length | 1977 bp |
|---|
| Protein Length | 658 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 646405937 |
|---|
| Product | cytochrome c heme lyase subunit CcmF |
|---|
| Protein accession | YP_003285473 |
|---|
| Protein GI | 262393619 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1138] Cytochrome c biogenesis factor |
|---|
| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTGCTG AAATCGGTCA CTTTGCTCTC ATTCTTTCGC TTGCAATGGC TGTGCTGCTG
AGCGTATTGC CATTGTGGGG AGCATCGAAT AATAACACCA TGCTCATGAA CACAGCGCGA
CCGCTATCTT GGTCTATGTT CCTGATGCTG TTGTTCTCTT TCGCCATTTT ATGTTGGGGA
TTTTATACCA ACGACTTCAC GTTACAGTAT GTAGCGAGCA ACTCGAATAG TCAGCTTCCT
TGGTACTACC GTTTAACCGC AGTATGGGGT GCACACGAAG GTTCACTGTT GCTATGGGTT
TTAATCCAAG CTGCTTGGAC TGTCGCTGTA GCGACATTCA GTCGTGGTAT GCCGCAAGAG
TCGGTTGCAC GTGTACTTGC CGTAATGGGC ATGATCTCAG TGGGTTTCCT ACTGTTTATC
ATCTTAACGT CAAACCCATT CTTACGTACG TTGCCTTTCT TCCCGGTTGA CGGGCGTGAC
TTGAACCCTC TGCTTCAAGA CCCTGGTTTG ATTGTTCACC CGCCAATGCT TTACATGGGC
TACGTTGGTT TCTCGGTTGC CTTCTCTTTT GCGATCGCAT CCCTAATGAC TGGACGCCTT
GATACGGCTT GGGCCCGTTG GTCTCGTCCT TGGACAACCG CTGCATGGGT ATTTTTAACA
CTCGGTATCG CACTAGGCTC TTGGTGGGCT TACTACGAAC TTGGCTGGGG TGGCTGGTGG
TTCTGGGACC CAGTAGAAAA CGCATCATTC ATGCCTTGGT TAGCGGGTAC CGCATTGATG
CACTCTCTTG CCGTGACAGA AAAACGCGGC ACATTTAAAG CGTGGACGGT ACTATTGGCA
ATCTCTGCAT TTTCGTTGAG TTTGTTGGGC ACATTCTTAG TCCGTTCCGG TATTTTAGTA
TCGGTGCATG CGTTCGCGTC TGACCCGTCG CGCGGTATGT TTATTCTAGG TTTCTTAGTT
TTCGTTATCG GTGGTTCTTT ACTGCTGTTT GCCGTGAAAG GGGCGGCAGT GCGTGTACGA
GGTAACTTCG ACTTAGTCTC TCGTGAAAAC GCGCTCCTAG CCAATAACGT ATTACTTATC
GCAGCACTTG TTGTGGTGTT AGTGGGGACA TTATTGCCGC TCGTACATAA GCAGCTTGGT
TTGGGGTCGG TTTCTATCGG TGCTCCATTC TTCGACATGC TGTTTGCGTG GTTGATGATG
CCATTTGCTT TCCTACTTGG TATTGGTCCA CTTATCCGTT GGAAGCGAGA CAATTTATCT
AAACTTGTGA AACCAATGCT CGTTTCAGGT GTGCTTGCTT TTGCTTTGGC CGCGGTATGC
GTATACCTGT TTGCCGACTT CTTCTCAACT ATGGCTTACA TTGGCTGGGT AATGGCGATT
TGGATTATTG CAATGCATGG CTTTGAACTA TATGAGCGTG CAACGCACCG TCATAGCTTT
AGTGAAGGCG TTCGCAAGCT GCAGCGTAGC CATTGGGCGA TGATGTTGGG TCATGTTGGT
CTGGCGGTAT CTGTTATCGG TATTGCGATG GTACAGAACT ACAGCATCGA GCGTGATGTA
CGTTTAGCAC CTGGCGAACA CTTCCAAATT CAAGGTTATG ATTTCTACTT CTCAGGCCTG
CGTGATAAAG ATGGTCCAAA CTACGATGGC TACATCGCGG ATTTTGAGAT CACACATGAT
GGCAAATACG TGAATACGCT TCACGCTGAG AAGCGCTTCT ACCGTACGGC TAAGTCTATG
ATGACCGAAG CTGCCATTGA CCGTGGAATT AGTCGTGACT TATACATTGC AATGGGTGAA
CGTTTAGACG ACAACCGATC TTGGGCTGTT CGTATTTACT ATAAACCGTT CGTTCGTTGG
ATTTGGGCTG GCTCTTTGAT TATGGCGTTA GGCGGTGCAC TAGCGATTTC AGATAAGCGT
TATCGCTTCC GTAAATCTTC AAAGAAAAAC GCGAAGTCAA AAGAGCAGGA GGCATAA
|
|---|
| Protein sequence | MIAEIGHFAL ILSLAMAVLL SVLPLWGASN NNTMLMNTAR PLSWSMFLML LFSFAILCWG
FYTNDFTLQY VASNSNSQLP WYYRLTAVWG AHEGSLLLWV LIQAAWTVAV ATFSRGMPQE
SVARVLAVMG MISVGFLLFI ILTSNPFLRT LPFFPVDGRD LNPLLQDPGL IVHPPMLYMG
YVGFSVAFSF AIASLMTGRL DTAWARWSRP WTTAAWVFLT LGIALGSWWA YYELGWGGWW
FWDPVENASF MPWLAGTALM HSLAVTEKRG TFKAWTVLLA ISAFSLSLLG TFLVRSGILV
SVHAFASDPS RGMFILGFLV FVIGGSLLLF AVKGAAVRVR GNFDLVSREN ALLANNVLLI
AALVVVLVGT LLPLVHKQLG LGSVSIGAPF FDMLFAWLMM PFAFLLGIGP LIRWKRDNLS
KLVKPMLVSG VLAFALAAVC VYLFADFFST MAYIGWVMAI WIIAMHGFEL YERATHRHSF
SEGVRKLQRS HWAMMLGHVG LAVSVIGIAM VQNYSIERDV RLAPGEHFQI QGYDFYFSGL
RDKDGPNYDG YIADFEITHD GKYVNTLHAE KRFYRTAKSM MTEAAIDRGI SRDLYIAMGE
RLDDNRSWAV RIYYKPFVRW IWAGSLIMAL GGALAISDKR YRFRKSSKKN AKSKEQEA
|
|---|
| |