| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_002752 |
|---|
| Symbol | |
|---|
| ID | 8556480 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | + |
|---|
| Start bp | 1278951 |
|---|
| End bp | 1280156 |
|---|
| Gene Length | 1206 bp |
|---|
| Protein Length | 401 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 646405843 |
|---|
| Product | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| Protein accession | YP_003285379 |
|---|
| Protein GI | 262393525 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| TIGRFAM ID | [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.483278 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAAGT TAACGATTCT TGGTGCTACT GGATCCATTG GTGCAAGCAC GCTTAAAGTG
GTCGAACAAA ACCCAGAGCT GTTTTCTGTC GTTGCCTTAG CGGCAAGCAC CAACGTTGAA
AAGATGATCG GGCTATGTCG TCAGTGGCAA CCTAAATACG CGGTAATGGC GGACAAAGCC
GCAGCGATTC AACTCCAATC TGAGTTACAT TTGGTTTCGC CAAACACCGA AGTATTAGGT
GGTGTGGATG CTCTATGCCA TATTTCTTCA TTGGACGAAG TTGACAGTGT GATGGCTGCT
ATTGTCGGAG CGGCTGGTCT ACTGCCTACC ATGGCTGCTG TGAAAGCTGG TAAGCGAGTA
TTGTTGGCAA ATAAAGAAGC GCTGGTAATG TCAGGACAGT TATTTATTGA TGCCGTAGAA
GAGTTTGGTG CGGAGCTACT TCCCGTCGAT AGTGAACACA ATGCTATTTT CCAGTGCTTA
CCACAGCAAG TACAAACCAA TTTAGGTCGT TGTAATTTAC AAGAACATGG CATTTCTCAT
ATTTTGCTGA CTGGTTCTGG TGGTCCTTTC CGTTACACTG ACATCGCAGA ACTGGAAAAG
GTGACTCCTG AGCAGGCGAT CGCCCATCCA AACTGGTCGA TGGGACCAAA GATTTCCGTT
GACTCAGCCA CGATGATGAA CAAAGGCTTA GAGTATATCG AAGCTAAATG GTTGTTTAAT
GCGGCTCGCG AGCAGCTAAA GGTTATTATT CATCCGCAGT CTGTTATTCA TTCAATGGTT
CAATACCGCG ATGGTTCGGT TTTGGCACAA ATGGGTGAGC CGGATATGGC GACCCCTATT
GCACTGACTA TGTCATACCC ATCAAGAGTT GAAGCTGGGG TTAAGCCACT AGACTTCACG
CAAATTGGCG AATTGACGTT TTTGCAACCT GATTTTGCTC GTTACCCATG TTTAAAACTA
GCAATTGATG CTTGTTATGA AGGTCAACAT GCAACAACGG CACTGAATGC AGCGAATGAA
GTCGCTGTTG ATGCATTTTT AAATAACAGC CTAGGTTTTA CGGATATCGC TCGCATCAAT
GAGTCTGTGT TGAATAAAAT CAATGCAAGC TGCAAAGCTG AGAATGCGAA TAGCTTGGAA
AGCTTGTTAG AGCTAGATAG AATGGCACGA ACTATTGCCC TAGAAACCAT ACGCGAGCGT
AGCTGA
|
|---|
| Protein sequence | MQKLTILGAT GSIGASTLKV VEQNPELFSV VALAASTNVE KMIGLCRQWQ PKYAVMADKA
AAIQLQSELH LVSPNTEVLG GVDALCHISS LDEVDSVMAA IVGAAGLLPT MAAVKAGKRV
LLANKEALVM SGQLFIDAVE EFGAELLPVD SEHNAIFQCL PQQVQTNLGR CNLQEHGISH
ILLTGSGGPF RYTDIAELEK VTPEQAIAHP NWSMGPKISV DSATMMNKGL EYIEAKWLFN
AAREQLKVII HPQSVIHSMV QYRDGSVLAQ MGEPDMATPI ALTMSYPSRV EAGVKPLDFT
QIGELTFLQP DFARYPCLKL AIDACYEGQH ATTALNAANE VAVDAFLNNS LGFTDIARIN
ESVLNKINAS CKAENANSLE SLLELDRMAR TIALETIRER S
|
|---|
| |