Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VEA_002700 |
Symbol | |
ID | 8556428 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio sp. Ex25 |
Kingdom | Bacteria |
Replicon accession | NC_013456 |
Strand | + |
Start bp | 1229206 |
End bp | 1229829 |
Gene Length | 624 bp |
Protein Length | 207 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 646405791 |
Product | RNA polymerase sigma-70 factor ECF subfamily |
Protein accession | YP_003285327 |
Protein GI | 262393473 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.61152 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGAGGAG ATGACTCCTC CCTAAAATTA AGGCCGATTA TGATGAGTGA TAGCCCAAAA AAACTGGGGC GCAGTGATTG GAACGATTAC ATGGACAAAG TGAAAGCTCG AGATAAAGAC GCGTTCGCTT TTGTATTCCG TTTTTACGCA CCCAAGCTGA AGCAATTCGC TTACAAACAT GTTGGTAATG AGCAAGTTGC TATGGAGATG GTGCAAGAGA CCATGGCGAC AGTTTGGCAG AAAGCGCACC TCTATGATGG GGAAAAGAGC GCGTTATCGA CTTGGATATA CACCATAATC CGAAACCTAT GCTTTGATCT GTTGAGAAAG CAGAAAGGTA AGGAGTTACA CATTCATTCT GATGACATTT GGCCGTCAGA ATATTATCCA CCAGATCTTG TTGATCACTA TTCACCAGAG CAAGACATGT TGAAAGAACA GGTGGTTAAA TTTTTAGATA TTTTACCGAA AAATCAGAGA GACGTTTTAC AAGCGGTGTA TCTTGAAGAG CTACCTCATC AACAGGTCGC TGAATTATTT GATATACCCC TCGGTACCGT AAAATCCAGG CTGAGGCTTG CAGTAGAAAA GCTAAGGCAT TCAATGCATA CGGAGCAACT ATGA
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Protein sequence | MGGDDSSLKL RPIMMSDSPK KLGRSDWNDY MDKVKARDKD AFAFVFRFYA PKLKQFAYKH VGNEQVAMEM VQETMATVWQ KAHLYDGEKS ALSTWIYTII RNLCFDLLRK QKGKELHIHS DDIWPSEYYP PDLVDHYSPE QDMLKEQVVK FLDILPKNQR DVLQAVYLEE LPHQQVAELF DIPLGTVKSR LRLAVEKLRH SMHTEQL
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