| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_002693 |
|---|
| Symbol | |
|---|
| ID | 8556421 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | + |
|---|
| Start bp | 1222347 |
|---|
| End bp | 1223267 |
|---|
| Gene Length | 921 bp |
|---|
| Protein Length | 306 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 646405784 |
|---|
| Product | putative GGDEF family protein |
|---|
| Protein accession | YP_003285320 |
|---|
| Protein GI | 262393466 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAATTCA CCTTGGAACA TGCGCAAGAC GTGTTATCCG GAATGCCTGA CCCCACTTTT
ATTTTGAGTG AAGATGGTAT CTATATTGAT GTTTTTGGAG GAACAGACAA AAAAGCCTAT
CACGATGGAA GCAATTTGAT AGGTAAGACG CTGCACAGCG TACTTGAGAA AGAGCAAGCC
GACTGGTTTA TCGAACAGAT CAATCGGTCA CTCAATCAAG ACAGTATTGT GACGATCGAG
TACAAGATGT GCGCCGACAG CATTCAGGGA ATAGATGCGA ACAGTGGGCC AAAAGGCGAC
CTCTATTACG AAGGGAAAAT CTGTCCGCTC ACTATAAACT ATCAAGGTCG CCGCGTTGTT
CTCATTCTTA CCCGCAACAT TTCCAACCGC CACCGAGTCG AAACCCTTCT TCGCCACCAA
AGCCAAATTG ACGCTCTCAC AAACATCTAC AATCGACGTG TTTTTTTCGA AAAGCTCACA
GAAGAAGTCA TTAAATCCCA AACTCCTGAC TACCAATCTG CTCTATTATT GTTTGATTTG
GATTTTTTTA AAGTTATCAA TGATAAACGT GGCCATGATG CGGGAGATTA TGTCTTAGAA
ACATTAGCCG ATTTGGTTTC ACACTTGTTG GTTAAAGACG AGATTTTTGC AAGAGTCGGA
GGGGAGGAGT TTGCGATTAT CCTGCCAGAA ACCTCTCTAT CGGCGGCGAA AGAAGTGGGA
GAGGAAGTAC GTTCCCATAT TCAAAATTGC CAGTTTGAAT TTGAAAAGAT TGAAATTCCG
GTCACGGTGA GCGTAGGCGT GGTCAAAATA GGCAGAAATG AAACCACCAA ACGCTTGTAT
GCGCATGCAG ATAAAGCGCT TTATGCTGCG AAAAGAAATG GCAGAAATTG CGTGGCGACT
CTGGATAGGC AGATGGAGTA A
|
|---|
| Protein sequence | MQFTLEHAQD VLSGMPDPTF ILSEDGIYID VFGGTDKKAY HDGSNLIGKT LHSVLEKEQA
DWFIEQINRS LNQDSIVTIE YKMCADSIQG IDANSGPKGD LYYEGKICPL TINYQGRRVV
LILTRNISNR HRVETLLRHQ SQIDALTNIY NRRVFFEKLT EEVIKSQTPD YQSALLLFDL
DFFKVINDKR GHDAGDYVLE TLADLVSHLL VKDEIFARVG GEEFAIILPE TSLSAAKEVG
EEVRSHIQNC QFEFEKIEIP VTVSVGVVKI GRNETTKRLY AHADKALYAA KRNGRNCVAT
LDRQME
|
|---|
| |