| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_002627 |
|---|
| Symbol | |
|---|
| ID | 8556355 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | + |
|---|
| Start bp | 1136307 |
|---|
| End bp | 1137080 |
|---|
| Gene Length | 774 bp |
|---|
| Protein Length | 257 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 646405718 |
|---|
| Product | putative deoxyribonuclease YjjV |
|---|
| Protein accession | YP_003285254 |
|---|
| Protein GI | 262393400 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0084] Mg-dependent DNase |
|---|
| TIGRFAM ID | [TIGR00010] hydrolase, TatD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00712504 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCTCT TTGATACCCA TTGTCACTTT GACTTTGATG TATTCCAAGG TGACTTTGCA
CATCAACTTC AGCTAGCTCA AACGCAAGGT GTGACAAGAA TTCTGATTCC TTCAGTGGGA
CCTCAAAACT GGGCTCGTAT TCAAACCTTG GCAGATCAAC ATGCCAATTT GTATTACGCC
CTTGGGTTTC ATCCGTATTT TCTTGAAGAT AACGTCGAGC AGCACGTTGC TGAATTGGAA
CATTATCTAA AACAAAATGT TCCCCAGTGC GTGGCAATAG GAGAGTGTGG GCTAGATTTT
GCCATTGATG TTGACCCACA GTTGCAAGAA AAGACACTTG AAGTTCAATT TGAACTGGCT
AGACGCTTCG AACTCCCAGT TATTTTACAT AGCCGAAAAG CGCACAATCG CCTTATTCAA
ATGGTTAAAG CGGCGAAGCT CCCTCGGGGA GGTGTGCTAC ATGCTTTCTC TGGGAGTTAT
CAGCAAGCAA TGGAGTGGGT CAAATTAGGT TTTTTTATCG GTGTAGGAGG AACCATCACC
TACCCAAGAG CGAAAAAAAC GCGCGACGCA ATTCAAAAAT TACCACTCAA ACATCTCGTG
ATCGAAACAG ATGCACCGGA TATGCCTATA CTTGGATATC AAGGGGAGTC GAATCACCCA
GCCAAACTCA TTCACGTCTT TAATGAGCTC GTAGAGTTGC ATAACGGCTC AAAGCAATCG
ATTGCCTCTC AGTTATGGAA AAATAGCAAT TTTGCTTTCT TGATATGTGA ATAA
|
|---|
| Protein sequence | MKLFDTHCHF DFDVFQGDFA HQLQLAQTQG VTRILIPSVG PQNWARIQTL ADQHANLYYA
LGFHPYFLED NVEQHVAELE HYLKQNVPQC VAIGECGLDF AIDVDPQLQE KTLEVQFELA
RRFELPVILH SRKAHNRLIQ MVKAAKLPRG GVLHAFSGSY QQAMEWVKLG FFIGVGGTIT
YPRAKKTRDA IQKLPLKHLV IETDAPDMPI LGYQGESNHP AKLIHVFNEL VELHNGSKQS
IASQLWKNSN FAFLICE
|
|---|
| |