| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_002619 |
|---|
| Symbol | |
|---|
| ID | 8556347 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | - |
|---|
| Start bp | 1129292 |
|---|
| End bp | 1131331 |
|---|
| Gene Length | 2040 bp |
|---|
| Protein Length | 679 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 646405710 |
|---|
| Product | C-di-GMP phosphodiesterase A-related protein |
|---|
| Protein accession | YP_003285246 |
|---|
| Protein GI | 262393392 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTTCCC AGCAATTAAA ACATTGGTTT GCCACGCTAA CCTCAAATAG CCCTTTCTTC
TTTGCCATTC TTGATAAAAA ACACAATTAT CGAATGGTAA GTGACCGTTA CTGCGATATC
GCAGGTTTAA GTCATGAGGA AATCATCGGC TTAAACGATT GCCAGGTACT GGGTGAGCAG
TTTTATAAAA AGCTGGCCCC TTACTATCAG CGTGCATTCA AAGGAACGCA TGTCGAAGCC
GAAATCACCC TCGATGAAAC CGACCTTGAA ACCAGCCTGC ACTTTAGTCT GTCACCGGTT
TTTGAAGGTA ACGAAATTCG CTTTGTCGTT TTTCACGCTG TGGATACTTC AGAAAAGCAG
ATCCTCGTAC GCTCCTTAGA GGAGTCCGAA AGTAAATTTG CGAAATTGAC ACAACTACTG
CCTGACGGTC TGCTGCTTAT CGAAGATGAC ATTATCATCT CTGCCAACCC TGCATCAGCA
CGCCTTCTGG GACTGAACTC TCCCCATGAG TTGCTAGGCG AGGAGCTCAG CCGTCTATTC
ATCGATGAAA ACAGCAAGAA AGTGTTTAGT CATCGTTTGA GTGCATTAAT TTCTGACAAG
CCGTTTGTTT GCTTAACCAG CGCGAGATGT GGCTTTGAAC GAAAAGTTCA GTTACACGCA
GATTCTACGG CGATATTAGG CAGCGAGTCT CAAATCATCT TGATCCAAGA CGCTGACGAT
ACACCCAAGA ATTTGTCTTC TGCATCGAAT GAAGACATAC ACATTGATTC GCTCACCAAA
CTCTACAACC GCTTTGGCTT CACCAAACGT TTGGAACAGC TGATCAAAAA GCAAACACCG
CTTCTGGTGT TCTATTTGGA TATCGATAAC TTCAAAAATA TTAATGACTC ACTTGGTCAC
CACATTGGCG ATAAAGTGAT TCAAGAGGTA TCGGCCCGTC TTAAACGATT ATTGCCAAAT
CAAGCGATTA TTGGTCATTT GGGTGGCGAT GAGTTTGGCG TCATTCTGCC AGAACCAGAA
AATACCCGCA TGGCTGAAAT TTTGTCAGAT CGCATTATCT CGTTGATCAA CCAGCCTTTC
GACTTGCACC ACTTCAGTAA ACGCCTTGCG TGCTCAATTG GTAGCGTTCG TTACCCTGAA
GACGGGCAAG ATGCGCGAAT CCTGCTACAA AATGCTGATA CTGCGATGTA TGAAGCCAAA
GATCGTGGCC GAAATCGCCT GATCAAATTT AACGACCAGA TGAACAAAGA AGCGCGCATG
CGTTTGTGGC TTGAAATCGA ACTGCAAAAA GCATTGCAGC AGAACGGTTT GGAGGTGTGG
TATCAACCAA AGGTTAACGC GCGTGACTTC AGCATTAATG GTGCCGAAGC GCTCGTTCGT
TGGAAACACC CTGTCGAAGG TTACATTAGC CCAGGTTCAT TCATTCCTGT CGCCGAGCGT
GCAGGGTTAA TCGAACATCT TGGACGCGTC GTGATGCGTG ATGTTTTCAA TACGGTAAAA
CGTTGGAAAC AACAAGGCAT ACTGCCAGGT CGTGTCGCTA TCAACCTCTC TCCCGAGCAA
TTTGGTAACC CACAGCTGAT CGACTTTATG GAAAAGTTGC TTCGCACTAC CGAGCTTGAT
CCAAGCTGCA TTACCTTCGA GCTAACCGAA AGTGCCGTGA TGAGTGATAG CGAACATACA
CTGCAAATGC TGAATGCGAT TAAGAAACTG GGCTTCGCCC TCTCTATCGA TGACTTTGGT
ACTGGTTACT CTTCCCTTTC CTACTTAGCG CGCTTCCCTA TCGACGAGCT GAAAATCGAC
CGCGCGTTTA TTAACGATAT CGACACGCTA CCCAAACAGG TCACTGTGAT TGAAAACATC
ATTAATCTGG GTAAGTCACT CGACTTGACG GTCGTTGCCG AGGGGGTGGA AACCCACCAG
CAAGCTACTT TGCTCTCTAA CCTTCAATGT AATGCGATTC AAGGATTCCA TTTTTATCGC
CCACAGCCAA AACATGAAAT TGAAGAGCTG TTTGTACAGA ATCGTCGTCA CAAGAACTAA
|
|---|
| Protein sequence | MPSQQLKHWF ATLTSNSPFF FAILDKKHNY RMVSDRYCDI AGLSHEEIIG LNDCQVLGEQ
FYKKLAPYYQ RAFKGTHVEA EITLDETDLE TSLHFSLSPV FEGNEIRFVV FHAVDTSEKQ
ILVRSLEESE SKFAKLTQLL PDGLLLIEDD IIISANPASA RLLGLNSPHE LLGEELSRLF
IDENSKKVFS HRLSALISDK PFVCLTSARC GFERKVQLHA DSTAILGSES QIILIQDADD
TPKNLSSASN EDIHIDSLTK LYNRFGFTKR LEQLIKKQTP LLVFYLDIDN FKNINDSLGH
HIGDKVIQEV SARLKRLLPN QAIIGHLGGD EFGVILPEPE NTRMAEILSD RIISLINQPF
DLHHFSKRLA CSIGSVRYPE DGQDARILLQ NADTAMYEAK DRGRNRLIKF NDQMNKEARM
RLWLEIELQK ALQQNGLEVW YQPKVNARDF SINGAEALVR WKHPVEGYIS PGSFIPVAER
AGLIEHLGRV VMRDVFNTVK RWKQQGILPG RVAINLSPEQ FGNPQLIDFM EKLLRTTELD
PSCITFELTE SAVMSDSEHT LQMLNAIKKL GFALSIDDFG TGYSSLSYLA RFPIDELKID
RAFINDIDTL PKQVTVIENI INLGKSLDLT VVAEGVETHQ QATLLSNLQC NAIQGFHFYR
PQPKHEIEEL FVQNRRHKN
|
|---|
| |