| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_002561 |
|---|
| Symbol | |
|---|
| ID | 8556287 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | - |
|---|
| Start bp | 1051782 |
|---|
| End bp | 1052576 |
|---|
| Gene Length | 795 bp |
|---|
| Protein Length | 264 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 646405650 |
|---|
| Product | 3-methyl-2-oxobutanoate hydroxymethyltransferase |
|---|
| Protein accession | YP_003285188 |
|---|
| Protein GI | 262393334 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0413] Ketopantoate hydroxymethyltransferase |
|---|
| TIGRFAM ID | [TIGR00222] 3-methyl-2-oxobutanoate hydroxymethyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00261967 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAA TGACCATCAA CGACCTAATC AAGTGGAAGC AAGAAGGTCG TAAATTTGCT
ACTTCAACCG CTTATGATGC GAGCTTTGCC CAACTGTTTG AAAGCCAAGA AATGCCAGTA
CTTCTTGTTG GTGATTCTCT AGGTATGGTT TTGCAAGGTC ACAACGATAC TCTGCCAGTA
ACGGTCGATG ATATCGCTTA CCATACTCGT TGCGTACGCG CAGGTAGCCC AAATTGTTTG
TTGATGGCTG ACATGCCATT CATGAGCTAC ACCACGCCAG AGCAAGCTTG CGAAAATGCG
GCTACACTGA TGCGTGCTGG TGCCAATATG GTGAAAATTG AAGGTGGTGA CTGGCTAGTC
GACACTGTAA AAATGCTCAC TGAACGCTCG GTTCCAGTTT GTGCTCACCT TGGTTTAACT
CCTCAAGCCG TGAATATTTT TGGTGGTTAC AAAGTTCAAG GTCGCGATCA AGAAAAAGCG
GACCGCATGG TGAAAGATGC GTTAGCACTG CAAGAAGCAG GCGCTCAAAT CGTCTTACTA
GAGTGCGTGC CTGCTGAGCT TGCTGAGCGT ATTACGCAAG TGCTCGACGT GCCTGTTATC
GGTATTGGAG CTGGTAACGT GACAGATGGT CAAATTCTCG TGATGCATGA TATGTTCGGT
ATCTCTGCCA ACTACATGCC GAAATTCTCC AAAAACTTTC TTGCTGAAAC AGGTGATATG
CGCAAAGCCG TTGCTAAATA CATTGAAGAT GTAGCCAACG GTGTATTCCC AGACGACGCT
CATACCATTG CCTAG
|
|---|
| Protein sequence | MKKMTINDLI KWKQEGRKFA TSTAYDASFA QLFESQEMPV LLVGDSLGMV LQGHNDTLPV
TVDDIAYHTR CVRAGSPNCL LMADMPFMSY TTPEQACENA ATLMRAGANM VKIEGGDWLV
DTVKMLTERS VPVCAHLGLT PQAVNIFGGY KVQGRDQEKA DRMVKDALAL QEAGAQIVLL
ECVPAELAER ITQVLDVPVI GIGAGNVTDG QILVMHDMFG ISANYMPKFS KNFLAETGDM
RKAVAKYIED VANGVFPDDA HTIA
|
|---|
| |