| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_002548 |
|---|
| Symbol | |
|---|
| ID | 8556274 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | + |
|---|
| Start bp | 1035462 |
|---|
| End bp | 1036013 |
|---|
| Gene Length | 552 bp |
|---|
| Protein Length | 183 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 646405637 |
|---|
| Product | AmpD protein |
|---|
| Protein accession | YP_003285175 |
|---|
| Protein GI | 262393321 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG3023] Negative regulator of beta-lactamase expression |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCCAA TTATCGAGAA TGGCTGGCTG ACACAGGCAA AGCATGTTCC GTCACCATTT
TTTGATGCCC GCTCTGATAT AAACGACATC TCTCTGCTGG TGGTACACAA CATCAGTTTG
CCTCCTGGGC AGTTTGGTGG ACCATATATA GAGGACTTCT TCACTGGCAA GCTAGACCCA
AACGCACATC CATTTTTTGA AGTTATTCAC AAAATGGGCG TTTCTGCACA TTGCTTGATT
AAGAGAAACG GCGAGGTTGT TCAATTTGTT TCTTTTCTCG ATAGAGCATG GCATGCCGGT
CAATCCAGTT TCGCGGGCAG GGAGCGTTGT AATGACTATT CCATTGGTAT CGAGCTTGAA
GGGACAGAAT TTACTGCCTA CACAGATGCG CAATATCAAT CACTTGCAGA GATCACTGAG
GTGATTATGC AGTCTTATCC CCACATCACC CTGCCACGAA TTACCGGTCA TCAATATATT
GCGCCCTTGA GAAAAAGCGA TCCTGGTCTA AGCTTTGATT GGGTGAAATA TAGACAGCTT
ATACAGCGTT GA
|
|---|
| Protein sequence | MRPIIENGWL TQAKHVPSPF FDARSDINDI SLLVVHNISL PPGQFGGPYI EDFFTGKLDP
NAHPFFEVIH KMGVSAHCLI KRNGEVVQFV SFLDRAWHAG QSSFAGRERC NDYSIGIELE
GTEFTAYTDA QYQSLAEITE VIMQSYPHIT LPRITGHQYI APLRKSDPGL SFDWVKYRQL
IQR
|
|---|
| |