| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_002544 |
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| Symbol | |
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| ID | 8556270 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | - |
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| Start bp | 1030809 |
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| End bp | 1032032 |
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| Gene Length | 1224 bp |
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| Protein Length | 407 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 646405633 |
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| Product | type 4 fimbrial assembly protein PilC |
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| Protein accession | YP_003285171 |
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| Protein GI | 262393317 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1459] Type II secretory pathway, component PulF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000177594 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAGCA CTACACCACA ACTTAAAAAC TTCCGCTGGA AAGGCATCAA CAGTTCTGGC
AAAAAGACGT CTGGACAAAC CCTCGCGATG ACAGAAATTG AAGTACGCGA GCGTCTAGAC
GCACAGCACA TCAAGATCAA GAAGTTAAAG AAAAGCAGTA TCTCGTTTCT CACTAAACTC
AGCCATCGCG TAAAAGGCAG AGACATCACG GTGTTTACCC GTCAAATTTC GACGATGTTG
ATAACCGGTG TACCCTTAGT TCAGGCTTTA AAATTGGTCT CAGAAAACCA TAAAAAAGCA
GAGATGAAAT CCATTTTGAT GAGCGTGACA CGCGCCGTTG AGGCAGGTAC ACCCATGTCA
AAAGCCATGC GCACTGCAAG TGAACACTTT GACCCACTCT ATACCGACCT TATCGCAACA
GGTGAGCAAT CCGGTAACTT AGCGGAAGTA TTCGAGCGCT TAGCCACCTA CCGAGAAAAA
AATGAGCAGC TTCGTGCGAA AGTGATCAAA GCACTGATTT ACCCAGCGAT GGTAGTGCTA
GTAGCGTTAG GCGTGTCGTT TATCATGCTC ACCAAAGTCA TTCCCGAGTT TGAAAAAATG
TTTGTTGGTT TTGGTGCTGA CTTACCTTGG TTTACCAGGC AAGTATTAGA TCTTTCCGCC
TGGACACAAA ACTGGAGTCC GTTTATCGCA CTAGGCTCCA TTAGTTTATT CATCTCGGCG
AGAGTCCTCT CTAAGCGTTC AGATTCTTTT CGCTTAATGC TCAACCGCTC TGTGCTTAAA
TTTCCTGTTC TGGGCCCTGT ATTATCAAAA GCCGCTATCG CCAAATTTAG TCGAACACTC
GCCACAAGCT TTACAGCGGG TATTCCAATT CTAACCAGTT TAAAAACCAC ATCAAAAACC
TCAGGAAACT TACACTATCA ACTCGCCATA GAAGAAGTTT ACCGTGATAC CGCCGCAGGT
ATGCCAATGT ATGTTGCCAT GCGTAACTGT AATGTGTTCC CTGAATTAGT GTTACAAATG
GTCATGATCG GTGAAGAGTC TGGTCGACTT GACGATATGC TCAATAAAGT TGCAACGATC
TACGAGTTTG AAGTCGATAA CACCGTCGAC AACCTTAGTA AAATTCTAGA GCCGCTAATT
ATCGTTTTTT TAGGCATCGT TGTTGGCGGA TTAGTGACAG CAATGTACTT GCCAATCTTT
AACTTAATGA GTGTATTGGG CTAG
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| Protein sequence | MKSTTPQLKN FRWKGINSSG KKTSGQTLAM TEIEVRERLD AQHIKIKKLK KSSISFLTKL
SHRVKGRDIT VFTRQISTML ITGVPLVQAL KLVSENHKKA EMKSILMSVT RAVEAGTPMS
KAMRTASEHF DPLYTDLIAT GEQSGNLAEV FERLATYREK NEQLRAKVIK ALIYPAMVVL
VALGVSFIML TKVIPEFEKM FVGFGADLPW FTRQVLDLSA WTQNWSPFIA LGSISLFISA
RVLSKRSDSF RLMLNRSVLK FPVLGPVLSK AAIAKFSRTL ATSFTAGIPI LTSLKTTSKT
SGNLHYQLAI EEVYRDTAAG MPMYVAMRNC NVFPELVLQM VMIGEESGRL DDMLNKVATI
YEFEVDNTVD NLSKILEPLI IVFLGIVVGG LVTAMYLPIF NLMSVLG
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