| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_002512 |
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| Symbol | |
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| ID | 8556228 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | + |
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| Start bp | 994761 |
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| End bp | 995804 |
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| Gene Length | 1044 bp |
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| Protein Length | 347 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 646405591 |
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| Product | tRNA pseudouridine 13 synthase |
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| Protein accession | YP_003285139 |
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| Protein GI | 262393285 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.18424 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAGATA TTTTATCTTC ATTGGCTTAT CTAACGGGTA AGCCTGTTGC ATCGGCAAAA
ATCAAAGCGC AACCAGAACA TTTTCAGGTT CGTGAGGATT TAGGTTTTGC CTTTACGGGC
GAAGGCGAGC ACCTAATGGT GCGCATTCGA AAAACTGGAG AAAATACCAG TTTTGTTGCG
AATGAGTTGG CGAAAGCTTG TGGCGTAAAG TCGAAAGACG TTAGCTGGGC AGGCCTTAAA
GACCGCCATG CGGTGACGGA ACAGTGGCTG AGTGTCCATT TACCGAAAGG GGAAACGCCG
GATTTCTCGG CATTCCTAGC TCAATATCCG AGTATTGAGA TCTTAGCGAC TGATCGACAC
AACAAAAAAC TGCGTCCTGG AGACTTAATA GGGAACGAGT TTGTTGTCAC TTTGTCTGAA
GTGACTGACG TTGAAGATGT AGAGCAACGC CTTGAAAAAG TGAAACAAGT TGGTGTGCCA
AACTACTTTG GTAGTCAGCG TTTTGGCAAT GATGGCAACA ACCTTGAAGA AGCACGTCGA
TGGGGACGTG AAAACGTTCG TACCCGTAAT CAAAATAAGC GCAGCATGTA TTTATCAGCG
GCGCGTTCGT GGATCTTCAA CCGTATCGTT TCTGCTCGTC TAGAAAGTGG TGTGTTTGAT
AAATTCATCG ATGGTGATAT TGCACAGACA AGTTCTGGCA CTCAGTTGAT TGATGCAAGC
AATATCGCAG ATCTACAAGC ACAATTTGCT GCAGGTGAAG TGGCAATTAC CGCGGCCCTA
GCAGGTGATA ATGCGCTTCC AACTCAAGCG GATGCGCTTA CTTTAGAACA ACCGTTCTTA
GATGAAGAGC CTGATCTCAT GGCGCTGATT CGTGGTAATC GCATGCGCCA CGACCGTCGC
GATATTGCGC TGAAGCCACA AGATTTAGCT TGGACGGTTG AAGGTAACAA CATTACGCTG
ACTTTCTCAC TGGATGCGGG ATCTTTTGCA ACCTCTATCG TTCGTGAGTT AGTTAATGAG
GTTGAAGTAG AAAGAGAATA CTAA
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| Protein sequence | MSDILSSLAY LTGKPVASAK IKAQPEHFQV REDLGFAFTG EGEHLMVRIR KTGENTSFVA
NELAKACGVK SKDVSWAGLK DRHAVTEQWL SVHLPKGETP DFSAFLAQYP SIEILATDRH
NKKLRPGDLI GNEFVVTLSE VTDVEDVEQR LEKVKQVGVP NYFGSQRFGN DGNNLEEARR
WGRENVRTRN QNKRSMYLSA ARSWIFNRIV SARLESGVFD KFIDGDIAQT SSGTQLIDAS
NIADLQAQFA AGEVAITAAL AGDNALPTQA DALTLEQPFL DEEPDLMALI RGNRMRHDRR
DIALKPQDLA WTVEGNNITL TFSLDAGSFA TSIVRELVNE VEVEREY
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