| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_002503 |
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| Symbol | |
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| ID | 8556219 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | + |
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| Start bp | 984869 |
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| End bp | 986188 |
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| Gene Length | 1320 bp |
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| Protein Length | 439 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 646405582 |
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| Product | 23S rRNA (Uracil-5-)-methyltransferase rumA |
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| Protein accession | YP_003285130 |
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| Protein GI | 262393276 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.088353 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCACGCA TCTTTCAACC GAAAAAGAAA ACCCAACTCA ATACTCGTCA TCAAGCGGTG
CAAGTGGAGC GTTTAGATCA CCACGGCGCA GGTATTGCTT ACCTAAAGAA AAAACCGCTG
TTTATTGATG GCGCATTGCC GGGAGAAGAA GTCGTCACAC AATTAGTGGA AGAAAAAAGT
AAATTTGCTC GCGGTAAACT GATTAAGATT CTCAAGCCGA GTGACACTCG CGTGGAGCCA
TTTTGTCCGC ATTACCACGA GTGTGGTGGC TGTGATTTGC AACATCTAGA TTATGACCAA
CAATTGACGT ACAAACAGCA AACACTGCGT CAGCTGATGC GAAAATTTTC AGGCAATGAT
ATCGAGCTTG ATGCGCCATT ATTAGGGGAT TCACTGGCCT ATCGTCGTCG TGCGCGAGTG
AGCTTATTTG TCGATAAAAA AACACGTCAG CTACATTTTG GTTTCCGTAA AAAGCAGAGT
AAGCAAATCG CGCAAGTGAC CGACTGCCCA GTGCTGGCGC CGGAACTGAA CGTTCTGCTT
CCAGAGATTT ATTCAGCACT AAAAGCGTTT AAAAAGCCGG AGCAATTGGG CCATGTAGAG
CTGGTTCTTG GTGATAATGG GCCGTGTATT ACGTTGCGTC ACTTGAGTGC TCTGACAACG
GTTGAAACTA ACGCTCTAAC GGAGCTGGCA AAACGTCATC ATGCATCGCT GTACTTAATG
CCAGCAACAG ATCAGCTAAA CCTTGTTGAA GGTGATATGC CTTTTTATCA AGAGGTTGGC
GTGAAAATTC CTTTTGCGCC AAATAATTTC ATTCAAGTGA ACCAAGCCGT AAACAAAAAA
ATGGTCAAGC AAGCGGTTGA GTGGTTAGAC CCGCAAAAGA GTGACCGAGT GTTAGATTTG
TTCTGCGGCG TAGGCAACTT CAGTTTACCG ATTGCGAAGT TAGCTAAGCA CGTAGTTGGG
GTCGAGGGTG TTGCAGAGAT GGTCGAAAAA GCTACAAATA ATGCATCCTT GAACCAAATC
AATAATGCGC AATTTTATCA CGCTAACCTT GAGCAAGATT TTGAAGGGCA GGTCTGGGCG
GCAGAACGGT TTGATAAAGT GCTGTTAGAC CCAGCACGCG CGGGGGCAAG TGGGATCATC
GATCAAGTTT CTGAGCTTGG CGCACAGCGT GTAGTTTATG TTTCTTGTAA TCCTGCTACC
CTTGCTAGGG ACAGCCAAAG CTTGATGGAG CAAGGCTATA AATTAACTAA ATTAGGTATG
CTGGACATGT TCCCTCATAC CAGTCATCTA GAATCGATGG CATTGTTTGA AAAGTCCTAA
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| Protein sequence | MARIFQPKKK TQLNTRHQAV QVERLDHHGA GIAYLKKKPL FIDGALPGEE VVTQLVEEKS
KFARGKLIKI LKPSDTRVEP FCPHYHECGG CDLQHLDYDQ QLTYKQQTLR QLMRKFSGND
IELDAPLLGD SLAYRRRARV SLFVDKKTRQ LHFGFRKKQS KQIAQVTDCP VLAPELNVLL
PEIYSALKAF KKPEQLGHVE LVLGDNGPCI TLRHLSALTT VETNALTELA KRHHASLYLM
PATDQLNLVE GDMPFYQEVG VKIPFAPNNF IQVNQAVNKK MVKQAVEWLD PQKSDRVLDL
FCGVGNFSLP IAKLAKHVVG VEGVAEMVEK ATNNASLNQI NNAQFYHANL EQDFEGQVWA
AERFDKVLLD PARAGASGII DQVSELGAQR VVYVSCNPAT LARDSQSLME QGYKLTKLGM
LDMFPHTSHL ESMALFEKS
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