| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_002404 |
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| Symbol | |
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| ID | 8556099 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | - |
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| Start bp | 878354 |
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| End bp | 879079 |
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| Gene Length | 726 bp |
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| Protein Length | 241 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 646405462 |
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| Product | lipopolysaccharide ABC transporter ATP-binding protein LptB |
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| Protein accession | YP_003285031 |
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| Protein GI | 262393177 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1137] ABC-type (unclassified) transport system, ATPase component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.052444 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCAGTAC TGAGTGCGAA AAACTTGGCG AAAAGCTACA AAAAGCGCAA AGTCGTAACC
GATGTTAGCT TGGAAGTTGA ATCTGGTCAG ATTGTTGGGC TGCTAGGCCC AAACGGCGCA
GGTAAAACCA CCTCGTTTTA TATGATTGTC GGCTTGGTGC CACGAGATGA AGGCACCATC
ACCATTGATG ATAAAGACAT CAGTATTCTG CCGATGCACA GTCGTTCGCG TCTCGGGATT
GGCTACCTTC CGCAAGAAGC GTCGATTTTC CGTAAGCTGT CGGTGGAAGA TAACATCATG
GCCGTACTCG AAACTCGTCA AGAAATGACA CGTGAAGAGC GCCAAGATAA GCTGGAAGAT
TTGTTGGAAG AATTCCACAT TCAGCACATC AGAACCAGTG CAGGTATGGC ACTATCAGGG
GGTGAGCGAC GCAGAGTGGA GATCGCTCGC GCTTTAGCAG CCAACCCTCA ATTCATTTTG
TTGGATGAAC CTTTCGCTGG TGTTGACCCA ATCTCGGTTA ATGACATCAA GAAAATCATC
GAGCATCTAC GCGATCGCGG CCTCGGAGTG TTAATCACTG ACCATAACGT GCGTGAAACA
CTGGACGTAT GCGAAAAAGC CTATATCGTA AGCCAAGGGC ACCTAATTGC ATCGGGAACT
CCGGCAGAAG TTCTCAATAA TGAACAGGTG AAACAAGTTT ATCTCGGCGA ACAATTCCGT
CTATGA
|
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| Protein sequence | MAVLSAKNLA KSYKKRKVVT DVSLEVESGQ IVGLLGPNGA GKTTSFYMIV GLVPRDEGTI
TIDDKDISIL PMHSRSRLGI GYLPQEASIF RKLSVEDNIM AVLETRQEMT REERQDKLED
LLEEFHIQHI RTSAGMALSG GERRRVEIAR ALAANPQFIL LDEPFAGVDP ISVNDIKKII
EHLRDRGLGV LITDHNVRET LDVCEKAYIV SQGHLIASGT PAEVLNNEQV KQVYLGEQFR
L
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