Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VEA_002403 |
Symbol | |
ID | 8556098 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio sp. Ex25 |
Kingdom | Bacteria |
Replicon accession | NC_013456 |
Strand | - |
Start bp | 876834 |
End bp | 878303 |
Gene Length | 1470 bp |
Protein Length | 489 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 646405461 |
Product | RNA polymerase sigma-54 factor RpoN |
Protein accession | YP_003285030 |
Protein GI | 262393176 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAACCTT CATTACAACT CAAGCTAGGT CAACAGTTAG CCATGACGCC ACAGTTGCAA CAAGCGATTC GCTTACTGCA ACTGTCGACA CTCGATCTTC AACAGGAAAT CCAAGAAGCC TTGGATTCAA ACCCATTATT GGAAGTTGAA GAAGGCCAAG ATGAGCCTGT AGCAAACGGT GAAGATAAAT CAGCGGTCGA GGCTGCTGAT AGCAACAGTG CTAACGAACC AGCAGACATT GACGTTCCAG ACAGTTCAGA CGTAATTGAG AAGTCAGAGA TCAGCTCTGA ACTTGAAATC GATACCACTT GGGATGACGT CTACAGCGCG AATACCGGTA GCACTGGCTT AGCTCTTGAC GATGATATGC CCGTCTACCA AGGCGAAACC ACGGAATCAT TGCATGACTA CCTAATGTGG CAGCTTGACC TGACACCATT CAGTGAAACC GATCGTACGA TTGCATTAGC GATTATTGAC GCTGTTGACG ACTACGGTTA CCTAACCCTA TCTCCTGAAG AAATTCATGA GAGCTTCGAT AACGAAGAGA TTGAGTTAGA CGAAGTAGAA GCCGTTCGTA AACGTATTCA GCAGTTCGAT CCGCTCGGTG TGGCATCACG CAACTTACAA GAGTGCCTAC TGCTACAGCT GGCGACTTTC CCAGAAGACA CGCCATGGCT TGCTGAAGCC AAAATGATTC TTGCGGATCA TATTGATCAC CTGGGGAACC GTGATTACAA GCTCGTCATC AAAGAGACTA AGCTGAAAGA AGCCGATCTC CGTGAAGTCC TCAAACTTAT CCAGCAGTTA GATCCTCGTC CCGGTAGCCG TATCACACCG GATGATACCG AGTACGTAAT TCCAGATGTG TCCGTTTTTA AAGACAACGG CAAATGGACT GTTTCTATCA ACCCAGATAG CGTTCCAAAA TTAAAAGTTA ATCAACAATA TGCTCAATTA GGCAAAGGCA ATAGCGCGGA TAGCCAGTAC ATCCGCAGCA ATTTGCAAGA GGCAAAATGG TTAATTAAGA GCTTAGAGAG TAGAAACGAG ACGCTACTCA AAGTTGCAAG ATGTATTGTT GAACATCAAC AAGATTTCTT CGAGTATGGT GAGGAAGCCA TGAAGCCAAT GGTACTAAAT GATGTAGCCT TGGCAGTGGA CATGCATGAA TCCACGATTT CTCGTGTAAC AACACAAAAA TTCATGCATA CACCACGTGG CATTTTTGAA TTGAAGTACT TCTTCTCTAG CCATGTTAGT ACTGACAACG GCGGAGAATG TTCGTCAACA GCAATTCGCG CACTCATTAA AAAACTGGTC GCAGCAGAGA ATACTGCTAA GCCATTGAGT GATAGCAAGA TTGCTGCTCT TCTGGCTGAC CAAGGGATTC AGGTCGCAAG ACGTACGATA GCCAAATATC GAGAATCCTT GGGAATTGCC CCTTCAAGTC AGCGTAAACG CCTATTATAA
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Protein sequence | MKPSLQLKLG QQLAMTPQLQ QAIRLLQLST LDLQQEIQEA LDSNPLLEVE EGQDEPVANG EDKSAVEAAD SNSANEPADI DVPDSSDVIE KSEISSELEI DTTWDDVYSA NTGSTGLALD DDMPVYQGET TESLHDYLMW QLDLTPFSET DRTIALAIID AVDDYGYLTL SPEEIHESFD NEEIELDEVE AVRKRIQQFD PLGVASRNLQ ECLLLQLATF PEDTPWLAEA KMILADHIDH LGNRDYKLVI KETKLKEADL REVLKLIQQL DPRPGSRITP DDTEYVIPDV SVFKDNGKWT VSINPDSVPK LKVNQQYAQL GKGNSADSQY IRSNLQEAKW LIKSLESRNE TLLKVARCIV EHQQDFFEYG EEAMKPMVLN DVALAVDMHE STISRVTTQK FMHTPRGIFE LKYFFSSHVS TDNGGECSST AIRALIKKLV AAENTAKPLS DSKIAALLAD QGIQVARRTI AKYRESLGIA PSSQRKRLL
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