Gene VEA_002403 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVEA_002403 
Symbol 
ID8556098 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio sp. Ex25 
KingdomBacteria 
Replicon accessionNC_013456 
Strand
Start bp876834 
End bp878303 
Gene Length1470 bp 
Protein Length489 aa 
Translation table11 
GC content45% 
IMG OID646405461 
ProductRNA polymerase sigma-54 factor RpoN 
Protein accessionYP_003285030 
Protein GI262393176 
COG category[K] Transcription 
COG ID[COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 
TIGRFAM ID[TIGR02395] RNA polymerase sigma-54 factor 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACCTT CATTACAACT CAAGCTAGGT CAACAGTTAG CCATGACGCC ACAGTTGCAA 
CAAGCGATTC GCTTACTGCA ACTGTCGACA CTCGATCTTC AACAGGAAAT CCAAGAAGCC
TTGGATTCAA ACCCATTATT GGAAGTTGAA GAAGGCCAAG ATGAGCCTGT AGCAAACGGT
GAAGATAAAT CAGCGGTCGA GGCTGCTGAT AGCAACAGTG CTAACGAACC AGCAGACATT
GACGTTCCAG ACAGTTCAGA CGTAATTGAG AAGTCAGAGA TCAGCTCTGA ACTTGAAATC
GATACCACTT GGGATGACGT CTACAGCGCG AATACCGGTA GCACTGGCTT AGCTCTTGAC
GATGATATGC CCGTCTACCA AGGCGAAACC ACGGAATCAT TGCATGACTA CCTAATGTGG
CAGCTTGACC TGACACCATT CAGTGAAACC GATCGTACGA TTGCATTAGC GATTATTGAC
GCTGTTGACG ACTACGGTTA CCTAACCCTA TCTCCTGAAG AAATTCATGA GAGCTTCGAT
AACGAAGAGA TTGAGTTAGA CGAAGTAGAA GCCGTTCGTA AACGTATTCA GCAGTTCGAT
CCGCTCGGTG TGGCATCACG CAACTTACAA GAGTGCCTAC TGCTACAGCT GGCGACTTTC
CCAGAAGACA CGCCATGGCT TGCTGAAGCC AAAATGATTC TTGCGGATCA TATTGATCAC
CTGGGGAACC GTGATTACAA GCTCGTCATC AAAGAGACTA AGCTGAAAGA AGCCGATCTC
CGTGAAGTCC TCAAACTTAT CCAGCAGTTA GATCCTCGTC CCGGTAGCCG TATCACACCG
GATGATACCG AGTACGTAAT TCCAGATGTG TCCGTTTTTA AAGACAACGG CAAATGGACT
GTTTCTATCA ACCCAGATAG CGTTCCAAAA TTAAAAGTTA ATCAACAATA TGCTCAATTA
GGCAAAGGCA ATAGCGCGGA TAGCCAGTAC ATCCGCAGCA ATTTGCAAGA GGCAAAATGG
TTAATTAAGA GCTTAGAGAG TAGAAACGAG ACGCTACTCA AAGTTGCAAG ATGTATTGTT
GAACATCAAC AAGATTTCTT CGAGTATGGT GAGGAAGCCA TGAAGCCAAT GGTACTAAAT
GATGTAGCCT TGGCAGTGGA CATGCATGAA TCCACGATTT CTCGTGTAAC AACACAAAAA
TTCATGCATA CACCACGTGG CATTTTTGAA TTGAAGTACT TCTTCTCTAG CCATGTTAGT
ACTGACAACG GCGGAGAATG TTCGTCAACA GCAATTCGCG CACTCATTAA AAAACTGGTC
GCAGCAGAGA ATACTGCTAA GCCATTGAGT GATAGCAAGA TTGCTGCTCT TCTGGCTGAC
CAAGGGATTC AGGTCGCAAG ACGTACGATA GCCAAATATC GAGAATCCTT GGGAATTGCC
CCTTCAAGTC AGCGTAAACG CCTATTATAA
 
Protein sequence
MKPSLQLKLG QQLAMTPQLQ QAIRLLQLST LDLQQEIQEA LDSNPLLEVE EGQDEPVANG 
EDKSAVEAAD SNSANEPADI DVPDSSDVIE KSEISSELEI DTTWDDVYSA NTGSTGLALD
DDMPVYQGET TESLHDYLMW QLDLTPFSET DRTIALAIID AVDDYGYLTL SPEEIHESFD
NEEIELDEVE AVRKRIQQFD PLGVASRNLQ ECLLLQLATF PEDTPWLAEA KMILADHIDH
LGNRDYKLVI KETKLKEADL REVLKLIQQL DPRPGSRITP DDTEYVIPDV SVFKDNGKWT
VSINPDSVPK LKVNQQYAQL GKGNSADSQY IRSNLQEAKW LIKSLESRNE TLLKVARCIV
EHQQDFFEYG EEAMKPMVLN DVALAVDMHE STISRVTTQK FMHTPRGIFE LKYFFSSHVS
TDNGGECSST AIRALIKKLV AAENTAKPLS DSKIAALLAD QGIQVARRTI AKYRESLGIA
PSSQRKRLL