| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_002372 |
|---|
| Symbol | |
|---|
| ID | 8556067 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | + |
|---|
| Start bp | 842195 |
|---|
| End bp | 843418 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 646405430 |
|---|
| Product | MSHA biogenesis protein MshG |
|---|
| Protein accession | YP_003284999 |
|---|
| Protein GI | 262393145 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1459] Type II secretory pathway, component PulF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0406716 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCAACTT TTCGTTATCA AGGCCGCACG CTAGACGGCT CATCCACTAA CGGCAAAATC
GAAGCAGTGA ACTCAGAGGC TGCGGCGGAA GCATTGATGA ACAAAGGGGT CATCCCGCTC
AATGTACGGT TAGAGAAAGA GTCGGCAAAA AGCCAAGTGA GCTTGTCTAA GCTATTTGTG
CCAGCCATTC CATTGGAAGT GATCATTCTT TTCTCTCGCC AGTTGTTTAG CTTAACTAAA
GCGGGCGTAC CGTTGCTGCG TTCTATGCGT GGCCTGCTGC AAAATTGTGA AAACAAACAG
CTCAAAGAGG CACTGGAAGA TGTCGTTTCT GAACTGAGTA ATGGCCGAGG TTTGTCTTCT
GCGATGCAGC AACACAGCAA AGTATTCAGC CCACTGTTCG TTTCTATGAT CAATGTAGGC
GAGAATACGG GTCGACTCGA TCAAGCGCTA TTGCAACTGG CAAATTACTA CGAGCAGGAA
CTCGAGACTC GCAAACGCAT CAAAGCGGCG ATGCGTTATC CGACGTTTGT GATTATCTTT
ATTACCATCG CTATGTTTAT ATTGAACATC TTGGTGATCC CTGAGTTTGC TTCCATGTTC
ACGCGCTTTG GTGTTGAGCT GCCATTGCCG ACGCGTATTT TGATCGCTAC TTCTAATTTC
TTTGTTAATT ATTGGGTGTT GTTGATTGTG GCAATGATTG GCGCGTTTGC GGTTTTCAGA
GCCTGGGTGG CGACGGCTGA TGGTCGGGAA AAGTTCGATA AGTTTCGGCT TCGGCTTCCA
ATTGTGGGCG ATATCGTTAA TCGCGCGCAG CTTTCCCGTT TTGCCAGAAC CTTCTCGTTG
ATGCTGAAGT CAGGCGTTCC ACTTAACCAG TCTTTAGCTT TAGCCGGGGA AGCTCTGGGG
AACCGCTTTT TAGAAAATCG AATTCTTGAG ATGAAATCCG CGATTGAAGC GGGTAGCACC
ATCTCGGTTA CCGCTATCAA CAGTAAAATC TTTACCCCCT TGGTGATTCA GATGATTGCA
GTAGGGGAAG AAACCGGTCG TATTGATGAG CTGCTGCTAG AAGTGTCGGA TTTTTACGAT
AGAGAAGTTG ATTACGATCT AAAAACACTA ACCGCAAGAA TAGAACCGCT ACTTTTGGTG
ATTGTCGCCG GCATGGTCAT GGTGCTAGCA CTGGGTATCT TCCTGCCAAT GTGGGGAATG
CTAGACATCA TCAAAGGCGG CTAA
|
|---|
| Protein sequence | MPTFRYQGRT LDGSSTNGKI EAVNSEAAAE ALMNKGVIPL NVRLEKESAK SQVSLSKLFV
PAIPLEVIIL FSRQLFSLTK AGVPLLRSMR GLLQNCENKQ LKEALEDVVS ELSNGRGLSS
AMQQHSKVFS PLFVSMINVG ENTGRLDQAL LQLANYYEQE LETRKRIKAA MRYPTFVIIF
ITIAMFILNI LVIPEFASMF TRFGVELPLP TRILIATSNF FVNYWVLLIV AMIGAFAVFR
AWVATADGRE KFDKFRLRLP IVGDIVNRAQ LSRFARTFSL MLKSGVPLNQ SLALAGEALG
NRFLENRILE MKSAIEAGST ISVTAINSKI FTPLVIQMIA VGEETGRIDE LLLEVSDFYD
REVDYDLKTL TARIEPLLLV IVAGMVMVLA LGIFLPMWGM LDIIKGG
|
|---|
| |