| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_002321 |
|---|
| Symbol | |
|---|
| ID | 8556006 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | - |
|---|
| Start bp | 776242 |
|---|
| End bp | 778719 |
|---|
| Gene Length | 2478 bp |
|---|
| Protein Length | 825 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 646405369 |
|---|
| Product | multimodular transpeptidase-transglycosylase |
|---|
| Protein accession | YP_003284948 |
|---|
| Protein GI | 262393094 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR02074] penicillin-binding protein, 1A family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000241558 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAGCCTG AATTGCCAGA TGTTGCAACT CTAAAAGACG TTGAATTACA AACACCTATG
CAGGTGTTTA GTCAAGACGG GAAGCTGATC GCACAGTTCG GTGAAAAGCG TCGTATTCCT
GTTACTTATG ATGAAATTCC TCAAGACTTA ATTCATGCGC TAATCGCCAC CGAAGATAGC
CGTTTTTACG AACACCCAGG TATCGATCCT ATCGGCATCA CTCGTGCAGC CGTTGTAGTT
GCGATCTCAG GTTCAGCCAA GCAGGGCGCA AGTACCATTA CGCAACAGCT AGCGCGTAAC
TTCTTCTTAT CTAATGAGAA GAAGATCATG CGTAAGATTA AAGAGATTTT CATTGCTATC
CACATTGAGC AGCTTCTGAG TAAGCAAGAA ATCATGGAAC TTTATGTCAA TAAAATCTTC
CTTGGTTACC GCTCATATGG TTTTGGTGCG GCCGCTCAAG TTTACTTTGG TAAGAGCCTT
AATGAATTGA CGTTAAGCGA ACTTGCGACA CTCGCAGGGA TGCCAAAAGC GCCATCAACG
ATGAACCCAA TTTACTCTCT TGAGCGTGCG ACAAAACGCC GTAACGTCGT GTTAATGCGA
ATGCTTGATG AAAAATACAT CACGCAAGAA CAGTATGACG AAGCACGCAA CGAACCTATC
GTGGCGCGTT ACCACAGTGC TGAAATTGAA CTTTCCGCTC CTTATGTGGC AGAACTAGCT
CGTGCATGGG CCGTAAAAGA GTACGGTGAA GAAGAAGCCT ACACCTCTGG CTTGAATATC
TACATGACAG TGGACTCTAA ACTGCAAGAT GCCGCGAATA CATCCGTGGT AAATAATCTG
CTGTCATACG ATGAACGTCA CGGCTACCGC GGTGCGGAGA AAGTGCTTTG GAAAGAAGGT
GAAACCGCTT GGAACAGCGA GCAAATAGAA AAGCACCTTA AGAAGCAACC AACTTATGGT
GACCTTTACC CTGCCGTCGT GACAAAAGTC GATGATAAAA CTGCGCAAGT TTGGGTTAAA
AACCATGAAG AGCAGAGCAT TCCTTGGACT GGAATGCATT GGGCACGTAA ATACATCACC
GAAAACCGCC AAGGCTCAAC GCCAAAATCA GCGCATGATG TTCTAGCGAC GGGTCAACAA
GTTTGGGTTC GCGAAGTGAG CGAACCCAAT AAAGATGACA ACACGACACA AAGCTGGAAA
CTGAGCCAAG TGCCAACAGC GAACACCGCG TTTGTCGCGA TGAACCCGGA AAATGGTGCG
ATATTGTCGT TAGTGGGTGG TTTTAACTTT GTTCATAGTA AATTTAACCG TGCCACTATG
TCAGTGCGTC AGGTTGGCTC AAGTATCAAA CCATTCATCT ACTCAGCCGC AATTGACAAG
GGACTTACCC TGGCCACTCT GATCAACGAT GCGCCAATTA ACAAATGGGA CGCAGGTTCG
GGTTCGGCTT GGCGACCTAA AAACTCACCA CCAACCTATG GCGGTCCAAC TCGCCTTCGC
CTCGGCTTAG CTCAGTCAAA GAACGTGATG GCAGTGCGTA CGCTGCGTGA AGTAGGCCTT
GATGAAACAC GTCAGTACCT TACTCGTTTT GGTTTTGATA TTAACCAAGT ACCACGTTCA
GAGACCATCG CGCTCGGTGC TGGTAGCTTA ACACCAATGA AAGTGGCACA AGGCTACTCT
GTATTTGCGA ACGGAGGTTA TTACGTCGAA CCGTTCTACG TAGAACGCGT GGAAGATGCA
TTCGGTGAAG TGCTGTTTAA AGCGAACCCA AAAAGCGTTT GTCATAAGGA TTGCCCACAA
ATGGGCGATG AGCCAGACAA TCGCTATGCC GATGAGTTTG GCGAACAAGA CGTCGCGATT
GATGGTTTGG CAACAGACAA CGCACTGGAA AATGATGAAC CTCAATATGC TCCACAAGTT
ATCTCTGAGC AAAACGCATT CTTGATGCGC GAGATGATGT ACAGCAACAT TTGGGGTGGT
GGTAACTGGC GTGAAGGTAC GGGGTGGAAC GGTACTGGCT GGCGTGCACA AAAACTGGGG
CGTCGTGATA TCGGTGGTAA AACGGGTACA ACGAATGACT CCAAAGATGC TTGGTACAAC
GGCTATGGTC CTGGTGTTGT TGCCATTGCT TGGGTTGGTT TTGATGATCA CTCACGCGCC
CTTGGTCGCA CAACGGTTAA TAGCAACCTA GGCAAAGGCC AAATTTCCGG TGCCGAATCG
GGTGCGAAAA CCGCAGAACC CGCTTGGATT GACTTTATGC GCGTTGCACT AGAAGAAACA
CCTGAGCAAG GTAAAAATAT TCCAGATAAC ATCATTCGTG TTCGTATTGA TCGCAACACT
GGCATGCTAA CGCACAAAGT AGACAGCACA TCGATGTTCG AATACTTTGA AAAAGGCACT
GAGCCTACCG AATACGCAGG AGACCGTTTG GAAGACAGTA TTTATTCTTC CGGCTCTGGC
GCAGAAGAGC TGTTCTAA
|
|---|
| Protein sequence | MKPELPDVAT LKDVELQTPM QVFSQDGKLI AQFGEKRRIP VTYDEIPQDL IHALIATEDS
RFYEHPGIDP IGITRAAVVV AISGSAKQGA STITQQLARN FFLSNEKKIM RKIKEIFIAI
HIEQLLSKQE IMELYVNKIF LGYRSYGFGA AAQVYFGKSL NELTLSELAT LAGMPKAPST
MNPIYSLERA TKRRNVVLMR MLDEKYITQE QYDEARNEPI VARYHSAEIE LSAPYVAELA
RAWAVKEYGE EEAYTSGLNI YMTVDSKLQD AANTSVVNNL LSYDERHGYR GAEKVLWKEG
ETAWNSEQIE KHLKKQPTYG DLYPAVVTKV DDKTAQVWVK NHEEQSIPWT GMHWARKYIT
ENRQGSTPKS AHDVLATGQQ VWVREVSEPN KDDNTTQSWK LSQVPTANTA FVAMNPENGA
ILSLVGGFNF VHSKFNRATM SVRQVGSSIK PFIYSAAIDK GLTLATLIND APINKWDAGS
GSAWRPKNSP PTYGGPTRLR LGLAQSKNVM AVRTLREVGL DETRQYLTRF GFDINQVPRS
ETIALGAGSL TPMKVAQGYS VFANGGYYVE PFYVERVEDA FGEVLFKANP KSVCHKDCPQ
MGDEPDNRYA DEFGEQDVAI DGLATDNALE NDEPQYAPQV ISEQNAFLMR EMMYSNIWGG
GNWREGTGWN GTGWRAQKLG RRDIGGKTGT TNDSKDAWYN GYGPGVVAIA WVGFDDHSRA
LGRTTVNSNL GKGQISGAES GAKTAEPAWI DFMRVALEET PEQGKNIPDN IIRVRIDRNT
GMLTHKVDST SMFEYFEKGT EPTEYAGDRL EDSIYSSGSG AEELF
|
|---|
| |