| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_002268 |
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| Symbol | |
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| ID | 8555953 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | + |
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| Start bp | 719215 |
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| End bp | 721719 |
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| Gene Length | 2505 bp |
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| Protein Length | 834 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 646405317 |
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| Product | ribonuclease R |
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| Protein accession | YP_003284896 |
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| Protein GI | 262393042 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAGACA ATATTCCAAA CGATCCTTTT GCAGATCGTG AGTCCAAAAA TTACGAAAAT
CCAATTCCAA GCCGAGAGTT TATCATCGAG TTTCTAGAGC AAGCGGGCGT TCCAATGAAT
CGCAACGACT TGTATGAGGC ACTAAAGCTT GAGGGCGAAG AGCAATACGA AGGGTTGCGT
CGTCGGCTAC GTGCGATGGA GCGAGATGGT CAACTGGTGT TTACCCGCCG TCAGTGCTAC
GCATTGCCTG AAAAACTTGA AATGGTGAAA GGTTACGTGA TTGGTCATCG TGATGGCCAC
GGTTGGGTGC GTCCAGAAGG CAGCGTCGGC AAGGATGATG ATATTCTGTT ACCGCACCAT
CAAATGAAGA ACATCATCCA CGGTGACTTT GTTTTAGTGC AACCTACAGA CAACAGCAAG
CGCGGTCGTC GTGAAGGGCG CTTGGTTCGA GTGTTAGAGG AGCGTAATGA TCAAATCGTC
GGTCGTTTCT TCCTCGAATA TGGTTATTCC TATGTTGTCC CTGATGACTC GCGTATCAGC
CAAGATATTT TGATCCCAAA TGAGCACAAA GCGGGTGCAC GCATGGGTAA CGTGGTCGTG
ATTGAAATTA CTGATCGTGG CTCACGCTCA CGTGGCATGA TGGGTAAAGT GGTTGAAGTA
CTTGGTGAAA ATATGGCACC AGGTATGGAA ACGCAAATTG CGATTCGTAC ACACCAAATT
CCTCACGAGT GGCCAGAGGC CGTCGATAAA CAAATCGAAA ACTTAGGCGA AGAAGTACCA
GAAGAAGCCA AAGTTGGTCG TGTGGATCTA CGTGAGTTAC CACTTGTGAC CATTGACGGC
GAAGACGCGC GAGACTTTGA TGATGCTGTT TACTGTGAGA AGAACAAAGA AGGTGGTTGG
CGTTTATGGG TAGCGATTGC TGACGTCAGT TACTACGTTC GCCCTGACTC TGCGCTGGAT
AAAGAAGCCA TCAACCGTGG TAACTCGGTG TACTTCCCAT CGCAAGTAGT GCCAATGCTA
CCGGAAGTGC TATCAAATGG TTTGTGTTCA CTTAACCCAC AAGTTGATCG CTTGTGTATG
GTGTGCGAAA TGACTATCTC AGAGACGGGT AAACTATCGG GCTACAAGCA CTACGAAGCC
GTGATGAACT CGCACGCTCG TCTCACATAT AGCAAAGTGA GCGCGATTCT AGAAGGGGAT
GAAGAACTAC GTGAGCGCTA CCAGCCGCTT GTTTCTCATC TAGAAGAGCT GCACAAGATG
TACAAAGTGC TGAAAGAAGC ACGAGATCAA CGCGGTGCAA TCGAATTTGA AACCGTTGAA
ACCAAGTTTA TCTTCAATGC GGAACGTAAA ATCGAAAGCA TTGAACCAGT GATTCGTAAT
GACGCGCACA AGATCATCGA AGAATGTATG ATTCTAGCCA ACATTGCTTC GGCATCGCTG
GTAGAAAAAG CGAAAGAGCC TGCGCTCTAT CGTATCCACG AATCTCCAGG TGAATTACGC
CTGCAAGGTT TCCGAGACTT CTTAAGTGAA CTTGGTCTTG AGCTAAAAGG TGGTTTAGAG
CCTTCACCAA CGGACTATGC TGATCTCGCA CGTCAAATCT CTGGGCGTCA AGATCAAGAG
TTGATTCAGA CCATGCTGCT ACGCTCAATG AAGCAAGCGG TATACAACGC AGATAACGCG
GGGCACTTTG GATTGGCACT GAAACGCTAT GCGCACTTTA CGTCGCCAAT TCGTCGTTAC
CCTGACCTGT TACTTCACCG TGCAATCAAG TATCTGATTG CTAAAGAAGA AGGTCGTAAT
CAAGATCGCT GGACACCAAC GGGTGGCTAC CATTACTCGT TCGATGATAT GGACTTTTAC
GGTGAACAAT GTTCGATGAC AGAGCGCCGT GCGGACGATG CAACACGTGA TGTTGCGGAT
TGGCTGAAGT GTGAATACAT GCAGGACCAC GTCGGTGATG AGCTAGACGG CGTGATTGCT
AATGTCACTA GCTTTGGCTT CTTTGTACGT TTAACGGATT TGCACATCGA TGGTTTGGTG
CATATTTCTA CCCTTGCGAA CGACTACTAT CAATTTGACC CGATTGGTCA ACGACTTATT
GGTGAAAGTT TCGGTAACAT CTATCGCTTA GGTGATGCAG TAAAAGTAAA AGTACTGGCT
GTTAACCTCG ATGATAAGCA AATTGACTTT GAATTGGTCG AAACAAGTCG TAAGCTACGC
GGTGAAGGTA AGACTGCGAA GAAACGCGCA GCGGAAGCAA AACGCAAAGC GAAAGATAAA
AAACGTGCTG CGACTCGCTC TTCATCGAAA GAAGGTGGCG CGCCTCGCGC AGTTCCTGCG
ATAGAGCCAA CTAAGCGTCC AGAAGAAACG GGCGCAGTGA GTAAGCGCAA TGGCCCCAAA
CGTGATGACG CCGAAGGCAA AAAGAAGCCT AAAGTGAAAA AAGCACGTAA AAAAAAGCCA
CACAGTAAGC CGAAGAAAAC CAAGCGCACT AAAAAAGAGG CGTAG
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| Protein sequence | MSDNIPNDPF ADRESKNYEN PIPSREFIIE FLEQAGVPMN RNDLYEALKL EGEEQYEGLR
RRLRAMERDG QLVFTRRQCY ALPEKLEMVK GYVIGHRDGH GWVRPEGSVG KDDDILLPHH
QMKNIIHGDF VLVQPTDNSK RGRREGRLVR VLEERNDQIV GRFFLEYGYS YVVPDDSRIS
QDILIPNEHK AGARMGNVVV IEITDRGSRS RGMMGKVVEV LGENMAPGME TQIAIRTHQI
PHEWPEAVDK QIENLGEEVP EEAKVGRVDL RELPLVTIDG EDARDFDDAV YCEKNKEGGW
RLWVAIADVS YYVRPDSALD KEAINRGNSV YFPSQVVPML PEVLSNGLCS LNPQVDRLCM
VCEMTISETG KLSGYKHYEA VMNSHARLTY SKVSAILEGD EELRERYQPL VSHLEELHKM
YKVLKEARDQ RGAIEFETVE TKFIFNAERK IESIEPVIRN DAHKIIEECM ILANIASASL
VEKAKEPALY RIHESPGELR LQGFRDFLSE LGLELKGGLE PSPTDYADLA RQISGRQDQE
LIQTMLLRSM KQAVYNADNA GHFGLALKRY AHFTSPIRRY PDLLLHRAIK YLIAKEEGRN
QDRWTPTGGY HYSFDDMDFY GEQCSMTERR ADDATRDVAD WLKCEYMQDH VGDELDGVIA
NVTSFGFFVR LTDLHIDGLV HISTLANDYY QFDPIGQRLI GESFGNIYRL GDAVKVKVLA
VNLDDKQIDF ELVETSRKLR GEGKTAKKRA AEAKRKAKDK KRAATRSSSK EGGAPRAVPA
IEPTKRPEET GAVSKRNGPK RDDAEGKKKP KVKKARKKKP HSKPKKTKRT KKEA
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