Gene VEA_002256 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVEA_002256 
Symbol 
ID8555941 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio sp. Ex25 
KingdomBacteria 
Replicon accessionNC_013456 
Strand
Start bp705966 
End bp707681 
Gene Length1716 bp 
Protein Length571 aa 
Translation table11 
GC content46% 
IMG OID646405305 
ProductN-acetylmuramoyl-L-alanine amidase AmiB precursor 
Protein accessionYP_003284884 
Protein GI262393030 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0860] N-acetylmuramoyl-L-alanine amidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000111797 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTGAGTT TTTCAAATTT TAGAGTAGTG GCGACGTTTG TCGCCACTTT TCTCCTTCTC 
ATCCCCAATT TAGCATTTGC TAACGTCGTT AAGAGTTTTC GAGTTTGGCC TTCTCCTGAT
GAAACGCGTG TTGTCATCGA TTTAGGCTCG GAAGCTGACT ATTCCTATTT CTCTTTATCC
GGACCGGATC GTCTTGTCGT GGATTTAAAA AGCACGACCA TGCAGGCCAA ACTGCCTGTT
ACTGTTACGG ACAGCCCGGT TTTAAAGCTA GTTCGAAAAA GCTCTCCGCC AGAGAAGGGC
ACCTATCGTT TGGTGTTTGA ACTGAAAAAG AGCGTTCAAG CAGAATTGTT TAAATTAAGC
CCAACACCTG GCGGGCAATA TGGTCACCGT TTGGTGATTG ACCTGCCGCA CGGTAAGAAA
GCATCGACTT CAGCTTCTAA ACCGAGCAAG CCAGCGGCGA CCAGTAAAGA CATGAGTTCA
GTACAAAGAG CTCAAGAAGT CTTGATCGTT ATCGACCCTG GTCACGGTGG TGAAGATCCT
GGCTCTATTG GCCCTTCACG CCGTAAGTAC GAGAAAGACG CGGTATTGAG TATCTCAAGA
AAAATTGCTG CTCAGCTCGA TGCTACGCCT GGGATTAAAA CGCGTATGAC ACGTACCGGA
GATTACTTTG TGAATCTAAA CCGTCGTGTA GCCATTGCCC GTGAAAATGA TGCGCACTTA
CTGATTTCCA TTCACGCTGA TGCGTTTACC TCACCGAAGC CTCGCGGAGG TTCGGTTTTC
GTACTGAATA CTCGTCGTGC AAATACTGAA ATTGCTCGCT GGGTTGAGAA CCATGAGAAA
CAATCTGAAA TATTAGGTGG TTCGGGTAAT GCGTTCTTCA CTAAGACCAA AGATCGTAAC
GTGAACCAAA CTTTGTTGGA CTTGCAGTTT AGTCATTCAC AAAAAGAAGG GTATAAACTG
GCAACAGAAA TCCTTGGTGA GATGGGGCGT GTTGCGCACC TGCATAACAC CAAACCGATT
AATACTAGCC TTGCTGTTTT ACGCTCTCCT CAGATTCCGT CTGTATTAGT GGAAACGGGC
TTTATTTCTA ACCCAACAGA AGAGCGGTTG CTGTTTCAAC GAGCGCACCA AGATAAGTTA
GCTCAGGCGA TTACCAAGGC GGTCGTTAAG TACTTAAAAG ATAATCCACC AGAGGGTACG
GTATTCTCGC CTTCAGCGAA GCCAATAGTG CATACCGTAA AACGTGGCGA GTCGTTATCG
GTGATTGCGA ATAAATATGG GCTTAGCTCT AAAGCGCTGA TGTCGGCAAA CAACTTGAAG
TCGACTGGAT TAGCAATTGG TCAGAAGCTC AAAATCCCTT CTGCTGGCAC GATTAAAGTA
CCAAGTAAAC CGATTACTGT TGAGACAGAA ACCATCATTC ATAAGGTTAA GTCAGGTGAG
TTCTTAGGTA AGATTGCGAG TCACTATAAA GTGAAGGTTT CAGATATCCG CCGTGAGAAC
AACTTGAAGT CAGATACCTT GTGGGTAGGA CAAAAGTTGA AGATAACCGT TGCTGTCAAA
GACAAGCCGA TCCGTAAGCA CAAAGTTTCT CGAGGTGAAT ACCTTGGTAA AATAGCGTCC
AAATACGGAG TCAGCGTTTC GAGCATTCGT AAAGCGAACA ACTTACGCTC CGATCAGCTG
GCGGTTGGGC AAGTCCTTAT CATTCCAAAC AAATAG
 
Protein sequence
MLSFSNFRVV ATFVATFLLL IPNLAFANVV KSFRVWPSPD ETRVVIDLGS EADYSYFSLS 
GPDRLVVDLK STTMQAKLPV TVTDSPVLKL VRKSSPPEKG TYRLVFELKK SVQAELFKLS
PTPGGQYGHR LVIDLPHGKK ASTSASKPSK PAATSKDMSS VQRAQEVLIV IDPGHGGEDP
GSIGPSRRKY EKDAVLSISR KIAAQLDATP GIKTRMTRTG DYFVNLNRRV AIARENDAHL
LISIHADAFT SPKPRGGSVF VLNTRRANTE IARWVENHEK QSEILGGSGN AFFTKTKDRN
VNQTLLDLQF SHSQKEGYKL ATEILGEMGR VAHLHNTKPI NTSLAVLRSP QIPSVLVETG
FISNPTEERL LFQRAHQDKL AQAITKAVVK YLKDNPPEGT VFSPSAKPIV HTVKRGESLS
VIANKYGLSS KALMSANNLK STGLAIGQKL KIPSAGTIKV PSKPITVETE TIIHKVKSGE
FLGKIASHYK VKVSDIRREN NLKSDTLWVG QKLKITVAVK DKPIRKHKVS RGEYLGKIAS
KYGVSVSSIR KANNLRSDQL AVGQVLIIPN K