| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_002188 |
|---|
| Symbol | |
|---|
| ID | 8555851 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | + |
|---|
| Start bp | 616717 |
|---|
| End bp | 618060 |
|---|
| Gene Length | 1344 bp |
|---|
| Protein Length | 447 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 646405215 |
|---|
| Product | lysine/cadaverine antiporter membrane protein CadB |
|---|
| Protein accession | YP_003284816 |
|---|
| Protein GI | 262392962 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0531] Amino acid transporters |
|---|
| TIGRFAM ID | [TIGR00905] transporter, basic amino acid/polyamine antiporter (APA) family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000189693 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCATCGA ATACGAAAAA AATCGGCCTA ATTGCCTGTA CGGGTGTAGT CGCCGGTAAC
ATGATGGGCA GTGGTATTGC ACTGTTACCT TCTAGCCTAG CTTCAGTAGG CTCTGTTTCA
ATTTTCAGCT GGCTGATCTG TTTGATCGGT GCACTGAGCC TTGCGTTTGT TTACGCTCGT
CTGGCAACCA AAAACCCTCA AGAAGGTGGT CCTATCGCTT ATGCGGGCGA AGTTTCCCCA
GTCTTTGGTT TCCAAACGGG CGTGCTTTAT TACCACGCGA ACTGGATTGG TAACCTAGCT
ATTGCTATTA CAGGTGTTTC TTACCTTTCA GTATTCTTCC CTGTGCTTAA TGACCCAATC
CCAGCAGGTA TTGCGACGAT TGCATCGGTA TGGATCTTCA CTTTCGTCAA CCTACTTGGT
GGTAGCTGGG TAAGCCGTCT ATGTACGCTT GGTCTTGTTC TAATCCTAAT TCCAGTTGTT
GGTACCGCTC TATTTGGTTG GACGCACTTC GACACTGCGC TATACAGCCA AAACTGGAAC
GTATCTGCGG GTACTGATAG CCATGCGATT GTGACTGCGG TTCTTATCTG TCTATGGTCA
TTCGTTGGTG TGGAATCAGC AGCAGTATCG ACAGGTATGG TAGAAAACCC TAAACGTACT
GTACCGCTAG CAACCATGCT GGGTACTGGT ATCGCAGGTG TGATTTACAT CCTATCAACT
CAAATGATCA GCGGCATGTT CCCTGCTTCT GAAGTCGCGG CATCAGGTGC GCCATTTGCA
TTGGCTACCA CTGAGCTATT CGGTAGCTGG ACAGCACCAT TCGTATCAGC ATTCACAGCA
CTAGCATGTT TTACTTCGCT AGGTTCTTGG ATGATGCTGG TGGGCGAAGC TGGTAAACGT
GCAGCAAGCG ATGGCAACTT CCCTAAAATC TACGGCGAAA CTGACAAAAA CGGTGTGCCT
AAGAAAGGTT TAATCCTTGC GTCAATCAAG ATGACAGCAT TAATGGTTGT ACTGATGTTC
TTCAGCTCTA AAACAGCACA CGCATCAGAC CTGTTCAACC AGCTAACGAC TGATGCAGTT
CTACTAACTA TGCTGCCTTA CTTCTACTCA AGCATTAACT TGATTCGCTT CGAAGGTATG
ACAACACGCA ACGGCTTCGT AATGCTGTTC TCTGGTGTAG CTTGTCTGTT CTGCTTCATT
GCCCTTGCTG GTGCAGAAGG CGGTACGCTA ACAGCAACCT TCATCGTGTC TCTCGTTATC
TTGATGTTCT ACAGCAAAAA AGCCGGCTTA GCTCAGTACA TGAAGCTACA CGCTGACGAC
ATGCCTGCTC AAGCAAGCAA CTAA
|
|---|
| Protein sequence | MSSNTKKIGL IACTGVVAGN MMGSGIALLP SSLASVGSVS IFSWLICLIG ALSLAFVYAR
LATKNPQEGG PIAYAGEVSP VFGFQTGVLY YHANWIGNLA IAITGVSYLS VFFPVLNDPI
PAGIATIASV WIFTFVNLLG GSWVSRLCTL GLVLILIPVV GTALFGWTHF DTALYSQNWN
VSAGTDSHAI VTAVLICLWS FVGVESAAVS TGMVENPKRT VPLATMLGTG IAGVIYILST
QMISGMFPAS EVAASGAPFA LATTELFGSW TAPFVSAFTA LACFTSLGSW MMLVGEAGKR
AASDGNFPKI YGETDKNGVP KKGLILASIK MTALMVVLMF FSSKTAHASD LFNQLTTDAV
LLTMLPYFYS SINLIRFEGM TTRNGFVMLF SGVACLFCFI ALAGAEGGTL TATFIVSLVI
LMFYSKKAGL AQYMKLHADD MPAQASN
|
|---|
| |