Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VEA_002173 |
Symbol | |
ID | 8555836 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio sp. Ex25 |
Kingdom | Bacteria |
Replicon accession | NC_013456 |
Strand | + |
Start bp | 594325 |
End bp | 598353 |
Gene Length | 4029 bp |
Protein Length | 1342 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 646405200 |
Product | DNA-directed RNA polymerase beta subunit |
Protein accession | YP_003284801 |
Protein GI | 262392947 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTTTACT CTTATACCGA GAAAAAGCGC ATCCGTAAGG ACTTTGGTAC TCGTCCACAA GTTTTGGACA TTCCATACCT GCTATCGATC CAGCTCGATT CGTTCGACAA ATTCATCGAA CAGGATCCTG AAGGTCAATA CGGTCTTGAA GCCGCTTTCC GTTCTGTATT CCCGATTCAG AGCTACAACG GCAATTCTGA GCTGCAATAC GTTAGCTACC GTCTTGGTGA GCCAGTTTTT GACGTTAAAG AATGTCAAAT CCGCGGTGTA ACTTACTCAA AGCCACTACG TGTAAAACTA CGCCTAGTTA TCTTTGATAA AGACGCGCCA GCAGGTACTG TAAAAGACAT TAAAGAACAA GAAGTCTACA TGGGTGAAAT TCCACTCATG ACAGACAATG GTACCTTCGT AATTAACGGT ACCGAGAGGG TTATCGTATC CCAGCTGCAC CGAAGCCCAG GCGTGTTCTT CGACAGCGAT AAGGGTAAGA CCCACTCTTC AGGTAAAGTT TTATACAACG CACGTGTTAT TCCTTACCGT GGTTCATGGC TTGATTTCGA GTTTGATCCT AAGGATAACT TGTACGTTCG TATCGACCGC CGTCGTAAGC TACCAGCATC GATCATTCTT CGTGCACTAG GTAAGTCGAC AGAAGAAATC CTAGATCTCT TCTTCGAGAA AGTGAACTTC GAAGTGAAAG ACCAAACTCT ATTGATGGAG TTGGTTCCAG ATCGTCTACG TGGTGAAACT GCGTCATTCG ACATCGAAGC GAATGGTAAA GTTTACGTTG AGCAAGGTCG TCGCGTAACA GCTCGTCATA TCCGCCAACT AGAAAAAGAT GGTGTTGATC ACATCGAAGT ACCAGTTGAG TACATCGTAG GTAAAGTTGC ATCAAAAGAT TACATCAATG AAGCAACTGG CGAGATCATT GTTAACGCTA ACCAGGAAAT CAGCCTGGAA GCACTAGCGA ACCTATCTCA GGCTGGCCAC AAAGCGCTAG AAGTTCTATT TACGAACGAT CTAGACCACG GTCCATTCAT GTCAGAAACA CTACGTATCG ACAGCACGGT TGATCGTATT TCTGCATTGG TAGAAATCTA CCGCATGATG CGCCCTGGTG AGCCGCCAAC AAAAGAAGCT GCAGAAGCTC TATTCGAAAG CCTATTCTTC TCTGAAGAGC GTTACGATCT ATCGACTGTT GGTCGTATGA AGTTCAACAG CTCTATCGGC CGTGAAGATG CTCAAGAGCA AGGCACACTT GATGAAACTG ATATCATCGA AGTGATGAAG AAGCTGATCG CGATCCGTAA CGGTAAGGGC GAAGTGGACG ATATCGACCA CCTAGGCAAC CGTCGTATCC GTTCTGTAGG CGAAATGGCT GAGAACCAGT TCCGTGTAGG TCTAGTACGT GTTGAGCGTG CAGTTAAAGA GCGTCTAAGC CTAGGCGATC TTGACGCAAT CATGCCTCAA GACTTGATCA ACGCGAAGCC AATTTCTGCG GCAGTTAAAG AATTCTTTGG CTCTTCACAG CTTTCACAGT TCATGGACCA AAACAACCCG CTATCAGAAG TAACGCACAA GCGTCGTATT TCTGCATTGG GTCCTGGCGG TCTAACTCGT GAACGTGCTG GCTTCGAAGT ACGTGACGTA CACGTAACGC ACTACGGTCG TCTATGTCCT ATCGAAACGC CTGAAGGTCC AAACATCGGT CTGATCAACT CTCTATCTGC GTTTGCGCGT TGTAACGAGT ACGGTTTCCT AGAGACACCA TACCGTCGCG TTGTAGATGG CGTAGTAACA GACGAAGTAG ATTACCTGTC TGCAATCGAA GAAGGCCAAT TTGTTATCGC TCAGGCGAAC GCTAAGCTAA ACGAAGATGG TACTTTTGCA GATGAGCTGA TCACAGCTCG TCAGAAAGGT GAATCTGGTC TACACCCTCG TGAGCACGCT CAGTACATGG ACGTTGCGAC AAACCAGGTT GTATCTATCG CTGCATCGCT TATCCCGTTC CTAGAACACG ATGATGCGAA CCGTGCATTG ATGGGTGCGA ACATGCAACG TCAGGCAGTT CCGACACTGA AAGCTGACAA ACCGCTTGTT GGTACTGGTA TTGAACGTAA CGTAGCAGTT GACTCAGGTG TAACTGCAGT TGCGAAACGT GGTGGTGTAA TCCAGTCAGT AGATGCTTCT CGTATCGTTG TTAAAGTAAA CGAAGACGAG CTAGTACCAG GTGAAGCTGG TATCGATATC TACAACCTAA CTAAATACAC ACGTTCTAAC CAGAACACAT GTATTAACCA ACGCCCATGT GTGATGCCAG GTGAACCTGT ATCACGCGGT GACGTGCTTG CAGATGGTCC TTCGACAGAC CTAGGTGAGC TAGCGCTTGG TCAAAACATG CGTATCGCGT TCATGCCTTG GAACGGTTAC AACTTCGAAG ACTCGATCTT AGTATCTGAG CGCGTAGTTC AAGAAGACCG CTTCACGACA ATCCACATTC AAGAACTTAC TTGTGTGGCG CGTGATACTA AGCTGGGCTC TGAAGAGATC ACAGCTGATA TTCCAAACGT AGGTGAATCT GCTCTGTCTA AACTAGACGA GTCAGGTATC GTTTACATCG GTGCTGAAGT TAAGGGTGGC GACATCCTAG TTGGTAAAGT AACACCTAAA GGTGAAACTC AGCTAACGCC TGAAGAGAAG CTACTACGTG CTATCTTCGG TGAAAAAGCA TCTGATGTTA AAGATACTTC ACTACGTGTA CCTAACTCTG TATCAGGTAC GATCATCGAC GTTCAAGTCT TCACTCGCGA CGGCGTAGAG AAAGACAAGC GTGCGCTTGA AATCGAACAG ATGCAGCTTA AAGAAGCGAA GAAAGACCTA ACTGAAGAAT TCCAGATTCT TGAGGGTGGC CTTCTAAACC GTGTTAAAGC TGTATTGATT GAAGGCGGTT ACTCTGAAGC GAAACTAGAC ACTACTGATC GTAAGAAGTG GCTAGAACTA ACGCTAGAAG ATGACGCACT ACAAACTCAA CTTGAGCAAC TTGCTGAGCA GTGGGACGAG CTAAAAGCTG ACTTCGATAA GAAGTTCGAA ACTAAGCGTC GTAAGATCAC TCAAGGTGAT GATTTAGCAC CTGGCGTACT GAAGATCGTT AAGGTTTACC TAGCGGTTAA ACGTCGCATT CAGCCTGGTG ATAAGATGGC GGGTCGTCAC GGTAACAAGG GTGTAATCTC TAAGATCAAC CCTGTTGAAG ACATGCCATA CGATGAAAAA GGTCAGCCTG TAGACATCGT ACTTAACCCA CTGGGTGTAC CTTCGCGTAT GAACATCGGT CAGATCCTAG AAGTACACTT AGGTCTGGCA GCGAAAGGTA TCGGTGACAA GATCAACCAG ATGGTTAAAG AGCAGCAAGA ACTAGCGAAA TTCCGCGAGT TCCTACAAAA AGTTTACGAC CTAGGCGATA CTCGCCAGAA AGTAGACATT GCTTCTCTAT CTGATGATGA AGTACGTACT CTGATCAAGA ACTTGCGTGG CGGTCTACCA ATCGCGACTC CTGTATTTGA TGGCGCTCCA GAAGAGTCAA TCAAAGCACT TCTTGAGCTA GCAGATCTAC CAACATCAGG TCAGTTAACA CTGTTTGATG GTCGCACAGG TGATGCGTTT GAGCGTCCTG TAACTGTTGG TTACATGTAC ATGCTGAAAC TGAACCACCT TGTTGATGAC AAGATGCACG CTCGTTCAAC TGGTTCGTAC AGCCTAGTAA CTCAGCAGCC ACTAGGTGGT AAAGCTCAGT TCGGTGGTCA GCGTTTCGGT GAGATGGAAG TATGGGCACT AGAAGCATAC GGTGCTGCTT ACACGCTACA AGAAATGCTA ACGGTTAAGT CGGATGACGT TAACGGCCGT ACTAAGATGT ACAAAAACAT CGTAGACGGT AACCACAGCA TGGAACCTGG CATGCCAGAA TCGTTCAACG TACTGTTGAA AGAGATCCGC TCGCTAGGTA TCAACATCGA GCTAGAAGAC GAAGAGTAA
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Protein sequence | MVYSYTEKKR IRKDFGTRPQ VLDIPYLLSI QLDSFDKFIE QDPEGQYGLE AAFRSVFPIQ SYNGNSELQY VSYRLGEPVF DVKECQIRGV TYSKPLRVKL RLVIFDKDAP AGTVKDIKEQ EVYMGEIPLM TDNGTFVING TERVIVSQLH RSPGVFFDSD KGKTHSSGKV LYNARVIPYR GSWLDFEFDP KDNLYVRIDR RRKLPASIIL RALGKSTEEI LDLFFEKVNF EVKDQTLLME LVPDRLRGET ASFDIEANGK VYVEQGRRVT ARHIRQLEKD GVDHIEVPVE YIVGKVASKD YINEATGEII VNANQEISLE ALANLSQAGH KALEVLFTND LDHGPFMSET LRIDSTVDRI SALVEIYRMM RPGEPPTKEA AEALFESLFF SEERYDLSTV GRMKFNSSIG REDAQEQGTL DETDIIEVMK KLIAIRNGKG EVDDIDHLGN RRIRSVGEMA ENQFRVGLVR VERAVKERLS LGDLDAIMPQ DLINAKPISA AVKEFFGSSQ LSQFMDQNNP LSEVTHKRRI SALGPGGLTR ERAGFEVRDV HVTHYGRLCP IETPEGPNIG LINSLSAFAR CNEYGFLETP YRRVVDGVVT DEVDYLSAIE EGQFVIAQAN AKLNEDGTFA DELITARQKG ESGLHPREHA QYMDVATNQV VSIAASLIPF LEHDDANRAL MGANMQRQAV PTLKADKPLV GTGIERNVAV DSGVTAVAKR GGVIQSVDAS RIVVKVNEDE LVPGEAGIDI YNLTKYTRSN QNTCINQRPC VMPGEPVSRG DVLADGPSTD LGELALGQNM RIAFMPWNGY NFEDSILVSE RVVQEDRFTT IHIQELTCVA RDTKLGSEEI TADIPNVGES ALSKLDESGI VYIGAEVKGG DILVGKVTPK GETQLTPEEK LLRAIFGEKA SDVKDTSLRV PNSVSGTIID VQVFTRDGVE KDKRALEIEQ MQLKEAKKDL TEEFQILEGG LLNRVKAVLI EGGYSEAKLD TTDRKKWLEL TLEDDALQTQ LEQLAEQWDE LKADFDKKFE TKRRKITQGD DLAPGVLKIV KVYLAVKRRI QPGDKMAGRH GNKGVISKIN PVEDMPYDEK GQPVDIVLNP LGVPSRMNIG QILEVHLGLA AKGIGDKINQ MVKEQQELAK FREFLQKVYD LGDTRQKVDI ASLSDDEVRT LIKNLRGGLP IATPVFDGAP EESIKALLEL ADLPTSGQLT LFDGRTGDAF ERPVTVGYMY MLKLNHLVDD KMHARSTGSY SLVTQQPLGG KAQFGGQRFG EMEVWALEAY GAAYTLQEML TVKSDDVNGR TKMYKNIVDG NHSMEPGMPE SFNVLLKEIR SLGINIELED EE
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