| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_002067 |
|---|
| Symbol | |
|---|
| ID | 8555707 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | + |
|---|
| Start bp | 474465 |
|---|
| End bp | 475298 |
|---|
| Gene Length | 834 bp |
|---|
| Protein Length | 277 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 646405071 |
|---|
| Product | shikimate 5-dehydrogenase I alpha |
|---|
| Protein accession | YP_003284695 |
|---|
| Protein GI | 262392841 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0169] Shikimate 5-dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00115853 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCTGC AAATCGATCG TTACGCCGTG TTTGGTAACC CTATTGGGCA CAGCAAGTCG
CCATTTATCC ATACACTCTT TGCTCGCCAA ACTAATCAGT CCCTAACATA CACCGCAGAA
TGTGCGCCTG TGGGTGGATT TATCGAGGCG GCGAAAGCAT TTTTTGCTGA CGGCGGCAAA
GGCTGTAACG TGACCTTGCC TTTTAAAGAA GATGCCTATC AATTTGCCAG CCGTTTGACC
GAGCGTGCTC AGCTTGCTGG AGCAGTGAAT ACACTTAAGA AGCTTGATGA TGGTGAAATC
ATTGGTGATA ACACTGATGG TGCAGGCTTA GTGCAGGACT TGTTGCAACA TCAAGTCATT
TTAGAAGGCG CACGCATCCT GATCATAGGA GCTGGTGGTG CCGCTCGAGG AGTGATTAAA
CCATTGCTCG ATCAAAAACC AACATCTCTA ACGATAACTA ATCGTACATT TTCCAAAGCC
GAAGAATTGG CAGAATTGTT TTCTGCGTAT GGCCCTGTTA CAGCAAAAGA GATGAATACC
ATTGCTGAAG AGTACGACGT CGTAATCAAC TCTACGTCTG CATCATTGAG TGGTGAGTTA
CCTGCGATCT CTTCCTCGGT GTTCGCCGCC AATAGTACAA GCTACGACAT GGTGTATGGC
AAAGGTGATA CCACATTTAA CCAATGGGCT AAGCAACACG GTGCGGCACA TGCTTATGAT
GGTTTAGGTA TGTTAGTTGG CCAAGCTGCT GAGAGTTTTA TGTTATGGCG CGGTCTTCGT
CCTGGAGCCA AACAGATTTT GCGTGAATTA AGAAAGAACC TTGAAGGTCA ATAA
|
|---|
| Protein sequence | MTLQIDRYAV FGNPIGHSKS PFIHTLFARQ TNQSLTYTAE CAPVGGFIEA AKAFFADGGK
GCNVTLPFKE DAYQFASRLT ERAQLAGAVN TLKKLDDGEI IGDNTDGAGL VQDLLQHQVI
LEGARILIIG AGGAARGVIK PLLDQKPTSL TITNRTFSKA EELAELFSAY GPVTAKEMNT
IAEEYDVVIN STSASLSGEL PAISSSVFAA NSTSYDMVYG KGDTTFNQWA KQHGAAHAYD
GLGMLVGQAA ESFMLWRGLR PGAKQILREL RKNLEGQ
|
|---|
| |