| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_002035 |
|---|
| Symbol | |
|---|
| ID | 8555675 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | - |
|---|
| Start bp | 442559 |
|---|
| End bp | 443764 |
|---|
| Gene Length | 1206 bp |
|---|
| Protein Length | 401 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 646405039 |
|---|
| Product | multidrug resistance protein |
|---|
| Protein accession | YP_003284663 |
|---|
| Protein GI | 262392809 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATAT CAAAACTACA GCTCATTTAT CTGGCAGCAT TATCGATGCT TGGCTTCGTT
GCTACCGATA TGTATCTGCC AGCATTCAAA GCGATGGAAA TCGACTTTGC AACAGGCCCT
GAGCAAATAG CGCTCTCTTT AACGGTATTC CTAGTTGGTA TGGCGGTTGG CCAGCTAATG
TGGGGATTGG CATCCGATAA ATTTGGCCAC CGCAATACAC TCGCAGCCGG GTTAGTGCTG
TTTACTATCG CGTCATTCGG TTTGGCTTTC TGTGACCAAG TATGGCAACT ACTGACACTG
CGCTTTATCC AAGCTATCGG TGTATGTGCA CCAGCCGTGA TCTGGCAAGC CATGGTCATT
AAACGCTACT CAAGCAGCAG TCAGCAAATT TTCGCAACGA TCATGCCGTT AGTCGCGCTA
TCACCAGCAC TAGCACCTCA ATTAGGGGTA GTGTTGGCAG ATAACTTCGG CTGGCACAGT
ATCTTTATTA CGCTGACACT AGTTGGTGTC TTCTTGGTCT TTGCGACAAT GGCCCAAAAA
GACGAGAAAG CAGAAATCAA ACAAACCAGT ATGTCTGCCG ACATCAAAGC GCTGCTGAGT
TCTAAAAAAT ACCTTGGCAA CGTGTTTATG TTTGCGACGG CTTCGGCTGC ATTCTTTGCT
TACCTAACTG GTATGCCAGA AATCATGGCG CAACTAGGCT ATGAAGCAAA AGATATTGGT
TTGAGCTTTA TCCCACAAAC TATCGCGTTT ATGGCTGGTG GTTACTTGGG TAAAGTCGGC
GTTCGTAAAT TTGGTGATGA AAAAGTTCTA CGTCAATTGA TTGGACTATT TAGTGTCGCG
GCAATAATGA TATTCATTGC CTCACAATGG GAACTGTCTT CTATCTGGCC AATTCTAGCG
CCTTTCTGTT TAATTGCGGT AGCCAATGGT GCGCTATACC CAATCGTAGT AAACCACGCG
TTGGCAAGTG CTAAGCAAAG CCCTGCAACA GCTGCAGGCT TGCAAAACAG CTTACAAATT
ACTGTGAGCA GTCTATCAAG CGCATTAGTT GCTGCAATGG CAAGCCAAGC TCAAATGGTA
ACGGGCGTTG CAATCATCAT CTGTATGGGT GGTCTTTGGA TGGGTTACAT CTTATCTAAC
CGTGAATTGT CTCAGCACTT CACGACTCCA GACAATGCTC GTGTAGTGAG TGAAGACGAA
CTTTAA
|
|---|
| Protein sequence | MKISKLQLIY LAALSMLGFV ATDMYLPAFK AMEIDFATGP EQIALSLTVF LVGMAVGQLM
WGLASDKFGH RNTLAAGLVL FTIASFGLAF CDQVWQLLTL RFIQAIGVCA PAVIWQAMVI
KRYSSSSQQI FATIMPLVAL SPALAPQLGV VLADNFGWHS IFITLTLVGV FLVFATMAQK
DEKAEIKQTS MSADIKALLS SKKYLGNVFM FATASAAFFA YLTGMPEIMA QLGYEAKDIG
LSFIPQTIAF MAGGYLGKVG VRKFGDEKVL RQLIGLFSVA AIMIFIASQW ELSSIWPILA
PFCLIAVANG ALYPIVVNHA LASAKQSPAT AAGLQNSLQI TVSSLSSALV AAMASQAQMV
TGVAIIICMG GLWMGYILSN RELSQHFTTP DNARVVSEDE L
|
|---|
| |