| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_002017 |
|---|
| Symbol | |
|---|
| ID | 8555657 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | + |
|---|
| Start bp | 425543 |
|---|
| End bp | 426904 |
|---|
| Gene Length | 1362 bp |
|---|
| Protein Length | 453 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 646405021 |
|---|
| Product | GTPase and tRNA-U34 5-formylation enzyme TrmE |
|---|
| Protein accession | YP_003284645 |
|---|
| Protein GI | 262392791 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0486] Predicted GTPase |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0189213 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTACAG ATACGATTGT CGCTCAAGCG ACCGCGCCTG GTCGTGGCGG TGTCGGTATT
ATTCGAGTAT CAGGCCCTAA AGCCAACCAA GTGGCGTTAG AAGTCACGGG TAAGACACTA
AAGCCCCGCT ATGCAGAGTA CCTGCCGTTT AAGTCAGAAG ATGGCACTGT GCTTGATCAG
GGCATCGCTC TGTACTTCCC TAACCCGCAC TCATTTACAG GTGAAGACGT ACTTGAGCTG
CAAGGCCATG GCGGCCCCGT CGTGATGGAT ATGCTGATAA AACGCATTCT AGGTATTGAT
GGTATTCGAG CAGCTCGCCC TGGTGAGTTC TCTGAACGCG CGTTCCTGAA CGATAAACTC
GACCTCGCTC AAGCAGAAGC AATTGCAGAC CTCATTGATG CAAGTTCTGA AGAAGCAGCA
AAATCGGCGC TGCAATCCTT ACAGGGCGCC TTTTCAGGGC GCATTAATAC CTTAGTTGAG
TCGCTGATTC ATTTGCGTAT CTATGTTGAG GCAGCCATCG ACTTCCCAGA AGAAGAGATC
GACTTTCTGG CCGACGGCAA AGTGGCTGGT GACCTACAAG CCATCATCGA CAACCTAGAT
GCGGTGCGCA AAGAAGCCAA CCAAGGCGCA ATCATGCGTG AAGGGATGAA AGTCGTGATT
GCTGGTCGTC CAAATGCGGG CAAATCAAGC CTACTGAACG CGTTATCAGG CAAAGAGTCT
GCAATCGTAA CCGACATCGC AGGTACCACG CGTGACGTCC TGCGTGAGCA TATCCACATT
GATGGTATGC CACTGCACAT CATTGATACA GCAGGTCTGC GTGATGCCTC CGACGAAGTC
GAGAAAATCG GTATCGAGCG CGCGTGGGAT GAAATCGCTC AAGCAGACCG CGTCTTGTTC
ATGGTGGATG GCACCACAAC CGATGCCACC GATCCGAAAG ATATCTGGCC AGACTTTGTG
GATCGCCTAC CAGACAACAT CGGCATAACC GTGATCCGAA ACAAAGCGGA TCAAACGGGT
GAAGAGATGG GGATCTGCCA CGTCAATAAC CCTACCCTCA TCCGCTTGTC AGCGAAAACT
GGTGCAGGGG TTGAAGCTCT GCGTGAACAC CTCAAAGAAT GCATGGGATT CTCAGGCAAC
AGTGAAGGTG GCTTTATGGC TCGTCGCCGT CACCTCGATG CGTTGGAGCG CGCCGCACAG
CACCTTCAAA TAGGCCAAGA ACAGCTTGAA GGCTATATGG CTGGTGAGAT ACTGGCAGAA
GAGCTGCGCA TCACCCAACA GCATCTCAAC GAGATTACCG GCGAGTTCAG TTCTGACGAC
TTACTGGGCC GAATCTTCTC TTCATTCTGT ATCGGGAAGT AA
|
|---|
| Protein sequence | MTTDTIVAQA TAPGRGGVGI IRVSGPKANQ VALEVTGKTL KPRYAEYLPF KSEDGTVLDQ
GIALYFPNPH SFTGEDVLEL QGHGGPVVMD MLIKRILGID GIRAARPGEF SERAFLNDKL
DLAQAEAIAD LIDASSEEAA KSALQSLQGA FSGRINTLVE SLIHLRIYVE AAIDFPEEEI
DFLADGKVAG DLQAIIDNLD AVRKEANQGA IMREGMKVVI AGRPNAGKSS LLNALSGKES
AIVTDIAGTT RDVLREHIHI DGMPLHIIDT AGLRDASDEV EKIGIERAWD EIAQADRVLF
MVDGTTTDAT DPKDIWPDFV DRLPDNIGIT VIRNKADQTG EEMGICHVNN PTLIRLSAKT
GAGVEALREH LKECMGFSGN SEGGFMARRR HLDALERAAQ HLQIGQEQLE GYMAGEILAE
ELRITQQHLN EITGEFSSDD LLGRIFSSFC IGK
|
|---|
| |