| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_001981 |
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| Symbol | |
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| ID | 8555615 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | + |
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| Start bp | 382571 |
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| End bp | 385693 |
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| Gene Length | 3123 bp |
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| Protein Length | 1040 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 646404979 |
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| Product | RND multidrug efflux transporter |
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| Protein accession | YP_003284609 |
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| Protein GI | 262392755 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCTTTA CAGATGTTTT TATAAAACGT CCAGTTTTAG CGGTATCGAT CAGTTTTTTG
ATTGCATTGC TTGGTTTGCA AGCCGTGTTC AAAATGCAAG TTCGTGAATA CCCTGAAATG
ACGAATACAG TGGTCACCGT GACCACCAGT TACTACGGTG CAAGTGCCAA CTTGATCCAG
GGCTTTATTA CTCAGCCATT GGAGCAAGCG GTGGCGCAAG CCGATAATAT TGATTATATG
ACCTCGCAAT CGGTGTTAGG TAAATCAACC ATTACTGTCA ACATGAAGTT GAATACCGAC
CCAAACGCGG CATTGGCTGA CATCTTAGCG AAAACTAACT CGGTACGTTC CCAGCTTCCA
AAAGAAGCCG AAGACCCGAC CGTAACGATG TCGACCGGTT CTACTACCGC GGTATTGTAT
ATTGGTTTTA CCAGTGACGA GTTGTCTTCC AGCCAGATCA CCGACTACCT TGAGCGTGTA
ATCAACCCAC AGCTATTCAC TGTAAATGGT GTATCAAAAG TCGACCTTTA CGGTGGTATG
AAATACGCGC TGCGCGTATG GCTAGATCCA GCCAAAATGG GCGCATTAAA GCTGACTGCA
ACGGATGTGA TGAGCGTTCT TAACGCCAAC AACTACCAAT CTGCGACGGG TCAAGCGACG
GGTGAGTTCG TGCTTTATAA CGGTAGCGCG GATACTCAGG TATCAAACGT TGCTGAACTT
GAAGCGTTGG TCGTAAAAAC GGGTGAAGGG GACGTTATTC GCTTAGGTGA TATCGCGAAG
GTAACACTTG AGAAGAGTCA CGACGTTTAC CGTGCAAGTG CAAACGGCCA AGAAGCCGTG
GTTGCTGCAA TCAACGCCGC GCCAAGTGCC AACCCAATCA ACATCGCTGC TGATGTGCTT
GAATTATTAC CTCAACTTGA GCGCAACTTA CCAAGTAACA TCAAAATGAA CGTGATGTAC
GACTCTACCA TTGCGATCAA CGAGTCAATT CACGAAGTAG TGAAAACGAT TCTTGAAGCG
GCAATTATCG TACTTGTAGT GATTACACTG TTCCTAGGTT CGTTCCGTGC GGTCATCATT
CCTATCGTCA CTATTCCACT CTCTTTGATT GGTGTGGCGA TGGTTATGCA GGCAATGGGC
TTCTCTTGGA ACTTAATGAC ACTACTAGCG ATGGTACTTG CCATCGGCCT GGTGGTGGAT
GACGCGATCG TGGTGCTAGA AAACGTGGAC CGTCATATCA AAGAAGGCGA GTCACCATTC
CGTGCAGCAA TCATTGGTAC GCGCGAAATT GCTGTGCCAG TTATTGCGAT GACATTAACG
CTAGGTGCGG TATACGCACC AATCGCGTTG ATGGGCGGTA TTACGGGCTC GTTGTTCAAA
GAGTTCGCTT TAACGCTAGC AGGTTCGGTA TTTGTGTCCG GTATCATCGC TTTAACGCTA
TCACCTATGA TGTGTTCAAA GATGCTGAAG GCGAACGAAA AGCCGAGCAA GTTTGAGCAA
AAAGTTCACC ATATCCTTGA TGGCATGACT AATCGTTACG CAAATATGTT AAAAGCAGTA
ATGGCGAGCC GACCAGTGGT GATCGTATTT GCCATTATTG TATTTGCAAG CCTACCTGTT
TTATTCAAGT TTATTCCTAG TGAACTAGCT CCTTCTGAAG ATAAAGGTGT TGTTGTGCTC
ATAGGGACCG CACCATCGAA TTCGAATTTG GACTACATCC AAAACACCAT GGATGACGTG
AATAAGATTC TCTCTGATCA ACCAGAAGTA GAATACGCTC AGGTATTTAA CGGTGTTCCG
GATTCTAATC AAGCGTTTGG TTTAGCTACA CTCAAACCAT GGGGCGAACG AGAAGCGAGC
CAAGCAGAAA TCAAACAGCG TGTTGGTGGG CTTGTTTCGA GCATTCCGGG AATGTCTATT
GCTGCCTACG AAATGCCGGA GCTACCAGGT GCTGGTTCAG GCCTTCCTGT ACAGTTCGTA
ATTACAACAC CAAACAACTT TGAAAGTTTG TTTACCGTTG CAAATGACAT TCTGTCAGAA
GTAGCAAGCA GTCCAATGTT TGTCTATTCC GATCTGGATC TGAAATATGA TTCTGCAACG
ATGAAGATAA AGATCGATAA AGACAAAGCG GGTGCCTACG GTGTGACTAT GCAAGACATT
GGTATCACCC TCAGTACGAT GATGGCAGAT GGCTATGTAA ACCGTATCGA CCTAAATGGC
CGTTCTTATG AGGTAATTCC TCAGGTTGAG CGTAAATGGC GTCTAAACCC AGAATCGATG
AAGAACTACT ATGTACGCTC TGTAGATGGT AAAGCGGTTC CATTAGGTAG TCTGATTACC
ATCGATGTGG TGGCCGAGCC TCGCTCTTTG CCACACTTCA ACCAGTTAAA CTCAGCGACT
GTAGGTGCAG TTACTGGCCC TGGTGTCTCG ATGGGAGATG CAGTTAATTG GTTTGAAAAT
ATCGCACAAA CCAAACTGCC TGCAGGCTAT AACCACGATT ACATGGGCGA ATCTCGTCAG
TTTGTGACAG AAGGTAGTGC CTTGTATGCA ACCTTTGGCC TTGCACTTGC GATCATCTTC
CTCGTTCTGG CGATTCAATT TGAATCACTC CGCGACCCTA TTGTCATCAT GGTATCTGTA
CCGCTAGCAA TATGTGGTGC CTTGATCGCG TTGGCGTGGG GTACGGCCTC AATGAACATC
TACTCACAGG TTGGTTTGAT CACGCTGGTC GGCCTGATCA CCAAGCACGG TATCTTGATC
TGTGAAGTAG CCAAAGAAGA GCAGTTACAT AATAAACTGT CTCGTATTGA TGCGGTGATG
GAGGCTGCGA AAGTGCGTCT TCGCCCTATC CTAATGACAA CCGCAGCAAT GATCGCAGGT
CTGATCCCGC TGATGTACGC AACAGGTGCA GGCGCCGCAC AACGTTTCAG TATCGGTATC
GTCATCGTTG CTGGTCTAGC AATTGGTACA TTGTTCACAC TATTCGTACT ACCTGTGATT
TACAGCTACT TAGCTGAAAA ACACAAACCA CTGCCAGTAT TTGTTGAAGA CAAAGACTTG
GAGAAGTTAG CACGAGTTGA CGAAGCGAAA GCAGCCCACC GTGAATTAGC GGATAACAGA
TAA
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| Protein sequence | MRFTDVFIKR PVLAVSISFL IALLGLQAVF KMQVREYPEM TNTVVTVTTS YYGASANLIQ
GFITQPLEQA VAQADNIDYM TSQSVLGKST ITVNMKLNTD PNAALADILA KTNSVRSQLP
KEAEDPTVTM STGSTTAVLY IGFTSDELSS SQITDYLERV INPQLFTVNG VSKVDLYGGM
KYALRVWLDP AKMGALKLTA TDVMSVLNAN NYQSATGQAT GEFVLYNGSA DTQVSNVAEL
EALVVKTGEG DVIRLGDIAK VTLEKSHDVY RASANGQEAV VAAINAAPSA NPINIAADVL
ELLPQLERNL PSNIKMNVMY DSTIAINESI HEVVKTILEA AIIVLVVITL FLGSFRAVII
PIVTIPLSLI GVAMVMQAMG FSWNLMTLLA MVLAIGLVVD DAIVVLENVD RHIKEGESPF
RAAIIGTREI AVPVIAMTLT LGAVYAPIAL MGGITGSLFK EFALTLAGSV FVSGIIALTL
SPMMCSKMLK ANEKPSKFEQ KVHHILDGMT NRYANMLKAV MASRPVVIVF AIIVFASLPV
LFKFIPSELA PSEDKGVVVL IGTAPSNSNL DYIQNTMDDV NKILSDQPEV EYAQVFNGVP
DSNQAFGLAT LKPWGEREAS QAEIKQRVGG LVSSIPGMSI AAYEMPELPG AGSGLPVQFV
ITTPNNFESL FTVANDILSE VASSPMFVYS DLDLKYDSAT MKIKIDKDKA GAYGVTMQDI
GITLSTMMAD GYVNRIDLNG RSYEVIPQVE RKWRLNPESM KNYYVRSVDG KAVPLGSLIT
IDVVAEPRSL PHFNQLNSAT VGAVTGPGVS MGDAVNWFEN IAQTKLPAGY NHDYMGESRQ
FVTEGSALYA TFGLALAIIF LVLAIQFESL RDPIVIMVSV PLAICGALIA LAWGTASMNI
YSQVGLITLV GLITKHGILI CEVAKEEQLH NKLSRIDAVM EAAKVRLRPI LMTTAAMIAG
LIPLMYATGA GAAQRFSIGI VIVAGLAIGT LFTLFVLPVI YSYLAEKHKP LPVFVEDKDL
EKLARVDEAK AAHRELADNR
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