| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_001950 |
|---|
| Symbol | |
|---|
| ID | 8555579 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | - |
|---|
| Start bp | 341696 |
|---|
| End bp | 344821 |
|---|
| Gene Length | 3126 bp |
|---|
| Protein Length | 1041 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 646404943 |
|---|
| Product | sensory box/GGDEF family protein |
|---|
| Protein accession | YP_003284578 |
|---|
| Protein GI | 262392724 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2200] FOG: EAL domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCAGCGTT TTCTGGTTAT TGTCGCGCTA TGTTGGAGCG CGTTTGCCGC GGCCTCAGAT
CCGAAAGTTT TGGTCGTGCA CTCCTATCAT CAAGGTTTTT TCTGGACGGA TTCCATACAG
CGAGGTATCG AGCAGCAATT GGGTGATCGA TCGCTGGATA TGCGCGTGCT TTATTTAGAC
TCGAAACGTA ACCAGAGTGA GCAGTTTTTC GCTCAGCTTG AATCCTTATA TCGTACGAAA
TTAAGCAAAG AACGATTCGA TGCTATTTTA GTGAGTGATA ACAACGCGCT TGAACTGATG
CAGCGTTTGG CGCCAATCAT CAAAGACACC CCGGTTATAT TTAACGGCAT CAATAATTAT
CATCCTTCTT TGCACCAATC TCTGAACGCA ACAGGAGTAA CAGAAGATGT CGATTTGGAG
GCAAATTTAG CCCTCATAGA GCGCCTACAC CCTGATTACA CCCAAATTCT TATTGTCAGT
GACCATTCCG TAACGGGAGA GGTATTACGC TATCAAATCG ACGATTTTGT ACATGAACAT
CCGCAATATC GCGACAAAAT TGTGCAAGTT ATTCCCGACA GTATCATTGA CTTAAAGCAA
CAAGTGGCGA AGCTGAATAA AGATAAAGTC GTCCTGTTTT GGACTTATTA CCGAGATAAA
CAGGGTGTGG TTGGCAGTGA ACGTGACTGG ATTGGCGTTA ACAGAGCCTC AAATGCGCCG
TTGTTTATGG TGCACGACAT TGGCTTAGGG CATGGTGCGG TTGGTGGCGT GATCCAAAGT
GGTTATCGGC ATGGCATTGA GAGCGCTGAG ATACTTGAGT TTGTGTTGGA TAACCCTGAC
CAAGCTCTGC CAGCCGTGAA GAAAAGTGAT TCTGAAATCA AGCTCGATTA TCAAGCTGTA
GTGCGCTGGG GGCTGGGTGC TGAGCAAGAG GTCTCTGCGG TATTTTTTAA TAAACCGATG
AAGTTTTCTG AGCGTTTTGC CAAAGAAATT CGCTTGTTTG GTAGCCTGTT TGTGGTGATG
TCGGTGGTCA TTTTGTTGAT GGGTTACTAT TTACAGCGGA TTCGTCGCAG CGAGAGTGCC
GCGCGAGAAA GCCAAGCCAT CTTAGAGTCG ATTTTTGATC AGAGCATGCA GTATATGGGC
ATTTTGGATG CCAACGGTGT ACTTAAATCG GGCAACGATC ACCTGCAATC TTTGCTGTAT
CACCAAGGGC TGCGTTTAGA CCGACCACTT TGGTTTCATC CCAATTGGAG TGAGAAAGCA
CAATCGTTGC TTGAGGCGTA TTTCCACGCG CCTCACCATC AAGTGTCGAC GTTTGAGGCT
GAAATTTGGA GTAAAGAGCA CGGTACATTG GTGTTGGAAA TTTCACTCAA GCCTTTTTCT
CAGCAAGTAG GAAATCAAAA CCAATACTTG TTTGAAGCGC GCGATATCAC TAGTCGTAAG
TTGATGGAAG ATAAGCTCTA TCAACGCGAA TCAACCCTGC GTAACTATTA TGAGCAACAG
CCAGTCATGA TGGTGACGCT CGACAGCAAT AACCGCATTC AAGAAGTGAA TCGATTTGCT
CAGCTACTCC TCGGCTACAA ACCGATGGAC ATGCTCGGAC ACCGCCTAAG GGAGTTTTAT
TTTGATGACA AGGTACTGTT TCCTCGCCAA GTGCTATTGC AACCCAATCA ACAGGTGCAT
GGGGTCTGGC GACGTGAAGT CGAGTATCGC CATGCAAACG GTCATCGTGT TTGGGTACGC
GAGAACATTC GTCCACTGAG TGAATCTGAT CAGCTATTGA TTGTGGGTGA AGATATTACT
GAAACCAAAC AGCTTTCCGA GAAATTGGAA TATCAAGCGC GCTATGACTT ACTGACAGGT
ACTTATAACC GAAACCACTT TGAACTAGAG CTCAAGACCG CACTGCGTGA GGTGGACAGC
CATCGTCGCG TCCACGCCAT GCTGTACCTC GACTTAGATC AGCTAAAAGT CCTCAATGAT
ACGGTTGGGC ATGATGCGGG TGACGCGGCG ATTCAATTTT GCGCCAGCAT GTTAGAGGAA
GTGCTGCCAT ACAATTCCAT CTTGGCTCGA ATGGGAGGCG ATGAGTTTGC GGTACTACTC
AAAGATTGCG ACGAATACGG CGCCATTAAT ATCGCCAAAC TGATCATCTC GACGTTGAGT
GAACATCTCT TTATTTGGGA AGATACGCGC TTGTTCATCA GTTGTTCTAT TGGTATTCGT
ATCATCGACC ATACGGCAGA GACGCCGCAA ATGGTGCACG CTCAAGCAGA CTCTGCGTGT
CATGCCGCCA AGGAGCAAGG CCGTAACCGC TACAATCTGT TCAGCTTAGA TAACGAAGAG
CTACAACGTC GCCAGATGGA AATGCAGAGC GTCAATTTGG TGCATGAGGC ATTGTCGAAT
CAGCGTTTAG AGTTGTTTGC TCAACCGATC AAAAGCTTAC AACAGCACGA TGCTCAGATG
TATTTTGAGA TTTTAGTGCG CATTCGCAAT GGATATGGTG ATTATGTTTC TCCTGCACTG
TTTATTCCGG CTTCCGAGCG CTACAACATT GCGCATTGGA TTGATAAACA GGTCATTACT
CAAACGCTAG AATGGTTTGA GCAACGCCCA GAGGTGGTTG AAAAACTCGG CCGTTGTTCG
ATAAACCTTT CAGGTCAATC TATGGGGAAT CAAGAGTTTA TCGATTTCTT ATTGGAGCGA
TTGGAACGTT CGTCCATGCC GTGTGAAAAA ATCTGTCTAG AAATCACCGA GACAGCAGCG
ATGAGTAATC TTGAGCAAGC CATTGAGCTC TTCACCAAGC TCAAAGCGCT GGGTTGCATG
ATTGCATTGG ATGACTTTGG TTCGGGCTTG TCTTCATTTG GTTACTTAAA GAAACTTCCC
GTTGATATCG TGAAAATTGA TGGTCTTTTC GTGCGAGATA TCAACGTAAA TGAAATGGAC
CGTGTGATGG TTCGCTCGAT CAATGATCTG GCAAAACAGC TAGGCAAAGT GACGGTGGCG
GAGTTTGTCG AAAACGAACA AGTCATGCAG CATTTGATCG ATCTTGGTGT GGATTATGGC
CAAGGCTACG GTATTGGGCA TCCTCAACCG CTTTCTGAGT TAGTTGAGCG ACTGACGGCT
GAGTAG
|
|---|
| Protein sequence | MQRFLVIVAL CWSAFAAASD PKVLVVHSYH QGFFWTDSIQ RGIEQQLGDR SLDMRVLYLD
SKRNQSEQFF AQLESLYRTK LSKERFDAIL VSDNNALELM QRLAPIIKDT PVIFNGINNY
HPSLHQSLNA TGVTEDVDLE ANLALIERLH PDYTQILIVS DHSVTGEVLR YQIDDFVHEH
PQYRDKIVQV IPDSIIDLKQ QVAKLNKDKV VLFWTYYRDK QGVVGSERDW IGVNRASNAP
LFMVHDIGLG HGAVGGVIQS GYRHGIESAE ILEFVLDNPD QALPAVKKSD SEIKLDYQAV
VRWGLGAEQE VSAVFFNKPM KFSERFAKEI RLFGSLFVVM SVVILLMGYY LQRIRRSESA
ARESQAILES IFDQSMQYMG ILDANGVLKS GNDHLQSLLY HQGLRLDRPL WFHPNWSEKA
QSLLEAYFHA PHHQVSTFEA EIWSKEHGTL VLEISLKPFS QQVGNQNQYL FEARDITSRK
LMEDKLYQRE STLRNYYEQQ PVMMVTLDSN NRIQEVNRFA QLLLGYKPMD MLGHRLREFY
FDDKVLFPRQ VLLQPNQQVH GVWRREVEYR HANGHRVWVR ENIRPLSESD QLLIVGEDIT
ETKQLSEKLE YQARYDLLTG TYNRNHFELE LKTALREVDS HRRVHAMLYL DLDQLKVLND
TVGHDAGDAA IQFCASMLEE VLPYNSILAR MGGDEFAVLL KDCDEYGAIN IAKLIISTLS
EHLFIWEDTR LFISCSIGIR IIDHTAETPQ MVHAQADSAC HAAKEQGRNR YNLFSLDNEE
LQRRQMEMQS VNLVHEALSN QRLELFAQPI KSLQQHDAQM YFEILVRIRN GYGDYVSPAL
FIPASERYNI AHWIDKQVIT QTLEWFEQRP EVVEKLGRCS INLSGQSMGN QEFIDFLLER
LERSSMPCEK ICLEITETAA MSNLEQAIEL FTKLKALGCM IALDDFGSGL SSFGYLKKLP
VDIVKIDGLF VRDINVNEMD RVMVRSINDL AKQLGKVTVA EFVENEQVMQ HLIDLGVDYG
QGYGIGHPQP LSELVERLTA E
|
|---|
| |