| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_001930 |
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| Symbol | |
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| ID | 8555559 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | + |
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| Start bp | 324551 |
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| End bp | 326998 |
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| Gene Length | 2448 bp |
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| Protein Length | 815 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 646404923 |
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| Product | sensory box/GGDEF family protein |
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| Protein accession | YP_003284558 |
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| Protein GI | 262392704 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTCGCT TCGCTATTCC TTCGCCTTTG ATGGCAGACT GGCAACAGGC TCTGCAACAA
TGCTGTGATG CTACTCAAGC TCAGGGACAA CTTTATACTC TGAGCGATAC CCAGCAGTGG
CTATCAACTG AGGTGTCTAC CTCGGCTCAA AATCATCGCG CTATCGTCGA AGTGGTAGTG
CAAGTTGCCG ATCAATTTAC ACCGACAGAC TTGACGATAA GCCACATATC CTTTGGACAG
CAAACCTTGA GCATAGGTCC GATTTGGCTA CCAAATGGCG ATCTGTTTGC CGTATTAGCG
CTGACTCACC CTGACGATCA AATCACGGTA GTGTCTGCTT GGCTGAGTGC ATTAGTGGGG
CGAATGAGCT TTGATGTCAG CTCACACTAC CAGCAAGAAC GAACACGCCA TCAAACTGCA
GCGACCACAC CATTACCGAC GCTGCAAGAG TTTATCGACT GTCTTGAAGA CCATATTTGG
ATAAAAGGCA TGGATGGTCT TTATTCGATG ACCAATCGAA GCGTAGAAAA TGCGTGGCAA
AAGACCAACA GTGAGATCAT CGGCAAAGAT GATTTCGCAC TATTTAGCCA CGAGCGAGCA
GAGAAGTTCA TTGAGGCCGA TAACTTGGTC GTGGCGACAG GCACGCTGAA CATCGTCGAA
GAATGCCGCC AAATTGATGA AAACAATAAC CCAACTTGGC TAGAAACCAT TAAGTCTCCT
GTCCGTGATA ATGACGGAAA CTTAATTGGC ATTCTGGGCA TGACGCGCAA CATCACACGC
CGGAAAATGG TCGAAACGCA ACTCTCATTG GCGTCCAAAA TTTTTAATAA CTCACAAGAA
GGCATGGTCA TTACTGATCG CAATGCCAAC ATCATTGATG TAAACACAGC CTTTACTCAA
ATCACCGGCT ATCGCTCTGA AGAGGTGATT GGAAAGAACC CCAGAATTCT GCGATCTGGT
CATCATGACC AAGGCTTCTA TAAACAGTTG TGGCATCAGC TCGAAACCAA AGGTCAATGG
AAAGGCGAGT TCATCAACCG AAAGAAAGAT GGCAGCATTT ACCCGCAGTT AGCGACCATT
AGTGCCGTAA TGGACGATAA AAATCATCTC ATTAACTACA TCTGTGTATT TGAAGATATT
TCCGTGCGTA AAGCGCACGA AGAAAAACTG CAGCGCATGG CCTTTTATGA TCCGTTAACG
AATCTGCCTA ATCGCACCCA TTTACTTAGC TTGCTTGAAC AACACATTGA AACCGGGCAC
AAGAACCAAC AGACGTTTGC CACCCTATTT CTGGATATCG ACCATTTCAA GCACATCAAC
GATAGCATGG GTCACTTTTG TGGTGATCAG TTGCTGTCTA AGTTGGCTAT CCGTCTGCAA
GATATTCTTC ACTTAAATGC GCATGTGGCT CGTATTGGCG GCGATGAGTT CGTGATCATT
TTGCCGGACG TCCACAGTGA TGTGGCTTTG CTGGAAACCG TCGGCGATAT TCTCAGCGTT
TTCCAACAAC CGTTCGACTT GGCAAATCAC GACTCACTGC GCGTCTCGAC CAGTATTGGC
ATAGCCTTAT ACCCAAGAGA CGGCCAAGAC AGCGAAACCT TACTCAAAAA CGCAGATACG
GCGATGTACT TAGCGAAGAA AAATGGGCGC AACGGCTACG CATTTTACTC ACCAGATTTA
ACCGATAAAT CGGTATCCCA TGTGCGCATT CAATCTGCTT TACATCAAGC GATAGAAAAG
CAGCAACTTC GATTAGAGTT CCAGCCACAA TATAACTTGG AGCAACATGC GATTGTTGGC
GTTGAAACCT TATTACGCTG GCAGCACCCC GAATTTGGCC TTGTACCACC AGCCGACTTT
ATTCCAATTG CAGAAAAAAC GGGGCTTATC CAAAGCATTG GCGAGTGGGT CTTGCTACAC
GCTTGTCAGC AAGGAAATGC TTGGCTGGAA CAAGGCGTTG AGTTTGGCAG AATTGCGGTT
AATGTGTCGG CATTACAGCT TCAGCAATCG AATTTCATTC AGAGATTGAG CGATATCCTC
AATCAAACTG GTTTCCCTGC TCAACGGCTG GATTTGGAGA TCACCGAGAG CTTTTTACTG
ATCGACCCTC AACAAGCCAT TGCGTCGTTA AATCAACTAA GAGAGTTAGG CATCGAGATT
TCTCTGGATG ATTTCGGCAC AGGCTATTCG TCTTTGTCTT ATTTGAAAGG TTTACCCATA
AATAAGCTGA AAATTGATCG TTCGTTTGTC AGTGATGTAC CCAGCAACAG CGATAGCAAT
GCGATTGTGA ATGCGATTAT CGCCATGGGC AAAACACTGT CATTGAAAGT GGTAGCGGAA
GGAATAGAAA CTCAGGAGCA AGCCGATTAC TTGTTCGAAA AAGGCTGTGT TTACGGTCAA
GGGTATCTTT TTAGCCGACC TGTAAGTGCG GAAAAACTTT TTCGTTGA
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| Protein sequence | MFRFAIPSPL MADWQQALQQ CCDATQAQGQ LYTLSDTQQW LSTEVSTSAQ NHRAIVEVVV
QVADQFTPTD LTISHISFGQ QTLSIGPIWL PNGDLFAVLA LTHPDDQITV VSAWLSALVG
RMSFDVSSHY QQERTRHQTA ATTPLPTLQE FIDCLEDHIW IKGMDGLYSM TNRSVENAWQ
KTNSEIIGKD DFALFSHERA EKFIEADNLV VATGTLNIVE ECRQIDENNN PTWLETIKSP
VRDNDGNLIG ILGMTRNITR RKMVETQLSL ASKIFNNSQE GMVITDRNAN IIDVNTAFTQ
ITGYRSEEVI GKNPRILRSG HHDQGFYKQL WHQLETKGQW KGEFINRKKD GSIYPQLATI
SAVMDDKNHL INYICVFEDI SVRKAHEEKL QRMAFYDPLT NLPNRTHLLS LLEQHIETGH
KNQQTFATLF LDIDHFKHIN DSMGHFCGDQ LLSKLAIRLQ DILHLNAHVA RIGGDEFVII
LPDVHSDVAL LETVGDILSV FQQPFDLANH DSLRVSTSIG IALYPRDGQD SETLLKNADT
AMYLAKKNGR NGYAFYSPDL TDKSVSHVRI QSALHQAIEK QQLRLEFQPQ YNLEQHAIVG
VETLLRWQHP EFGLVPPADF IPIAEKTGLI QSIGEWVLLH ACQQGNAWLE QGVEFGRIAV
NVSALQLQQS NFIQRLSDIL NQTGFPAQRL DLEITESFLL IDPQQAIASL NQLRELGIEI
SLDDFGTGYS SLSYLKGLPI NKLKIDRSFV SDVPSNSDSN AIVNAIIAMG KTLSLKVVAE
GIETQEQADY LFEKGCVYGQ GYLFSRPVSA EKLFR
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