| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_001909 |
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| Symbol | |
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| ID | 8555538 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | + |
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| Start bp | 300611 |
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| End bp | 303157 |
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| Gene Length | 2547 bp |
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| Protein Length | 848 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 646404902 |
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| Product | GGDEF family protein |
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| Protein accession | YP_003284537 |
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| Protein GI | 262392683 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTACTG CTACGACTCA AATTACACTG CGTACCGCTG TTCTCATTCC ATTTGTCATG
ATCTTCTTAC TGGCGATCGG TGTCATTGTC TACGTCCAAA AACAAAGCTA CGAAGAAGTG
GTCACAGATA TCAGCGACAA ACAACTTTCC GTGTTAACCG AAAGTGTCCA CGACCACCTT
AATAGCTATC TGCGCAAGCC GTTTACTGCA GTTATGGCTC TCGCACATAA CGTCAGCTAT
CACAACCTTT ATCACCCTCA CGACACCTCA GATATTCAAA GCTACCTGCT GAGTGCATTC
AAAAACCTTT ACCAATCGAT ACCGCAGTTG GATGTCATCG CATTTGGTTC AGAAAGCGGT
GACTTTGCCG GGTTCCGCCG CGAGCTTTCC GACGATTACA CCTTAATGGT TCAAGATCGA
TATACCGATG GTGATCTGAT TATTTATGGC ACCAACCATG TAAGTAATAG CATTCGAACG
GTTATCTCTC CATACGATCC TCGCACTCGC CCATGGTATA CGCCCGTCGC AGAGACTCAA
ACCTCGATGT GGTCTGAGAT TTATACGAAT GCCGATGAAC GCCAGGATAT TACGCTGTCA
GCCATGACAC CGGTGTATAA ACACGACCAA TTTGCTGGCG TGTTGGTGAC AGACATTCGC
ATCAACACAT TTAACGAATT TCTACGTGAG TTAAAATACA ACACCAAAGC TTCGGTCTAC
ATCATGGACC CAGAGCATCG TTTAATCGCT CACTCAGGCC CGGGAAGCGT TATCTCATGG
GGCACAAAGT TTTCTGATAA AGGGCAGCGT TTGTTTGCGG CTGAAAACGC AGATCCGATC
ATCAAAATCA GTGCGAGCCG CGTTCGGTCG TTTGATCTCA ACAATACTAA GCAACCTTAC
ACCTTTTCAT TTGAGCATGA CGGCCAACGT ATTTTCAGCC GACTAACCCC ATACCGAGAT
CAAAACGGTT TAACATGGTT TATTGGCACC TCTATATCTG AATCCGAGTT GCTGGGTACA
TTGCCGAAAA GCCAACAAAA GAGTTGGCTA GTCGGGTTTA TCGTCAGCTT ATTTGGTATC
GCCATCAGTT GGATCATTTT CAACCGAGTC ACCAGACCGA TTAACGCGAC GGCTGACGCC
GCCCAACACC TTGCGAATGG CGATTGGGAC AGCAGTATGC CAAAACCTGG TTATGTGTAT
GAGACAACGG TACTTGTGCA TGCCTTTAAT GAGATGACGA GTAACCTCAG AGCCTCATTT
AAAGCGTTGC GTGAGCAGTT GGTTTATGAC TCTCTGACAC GCTTATACAG TCGTCAGGGC
TTGGTCGAAA TCTGTGAGAA CCAATCTCAC CTGTGCCACG GCAGTTTATT TTTACTTGGT
ATCAACAAAT TTAGAGATAT CAACGACAGT GTGGGGCATC ATAACGGTGA TCAACTGTTG
GTCAGCATCG CAGAAAGGCT AAAACAAGAG TTTAGTGATA ACGCGTTACT GGCTCGGATT
GGTGGTGATG AGTTCGCAGT GTTTCTCTCA AACGCCGATA CTGAAGCCAA AGTTAAACAA
ACCGAGCGTC GATTACAGCA ACTCTTTTCC ACCCCATTTA TGGTGGAAGG TGAGAATGTA
GTGATGAAGA TTTCACTTGG CATTGTGCAA ACCCAACCAA ATGAAACCAT GCCGCTGTGG
CTTCGCAACG CCAGCATCGC ATTAAGCTAC GCCAAGCAAG ACTCACTGAC CGGTGTCTGT
CATTACAGCC CTGAACTGGC AAGCGCTTCA AAGTTCCGCA CCCAAATGCT GACTAAGATT
CAAACTGGCA TCGAAAACCA AGAGTTTGTC CCTCATTATC AACCTATTGT GGATCTCGCT
AGTGGTAATG TGTGTGGCGC AGAAGCGCTG GCGCGCTGGC ACAGTGACTC AGGAATGGTG
TCACCATTAG ATTTTATTCC AATCGCAGAA GAAAGCGGCA TGATCAAAGC CATTGGCCAA
CAAATTCTGT TACAAGCTTG CCGCGATACA TACCAAGCCA TTCAAAGTAA TCAGTGGCCA
TCAGACTTCC AACTGCATGT GAACATCTCC GTTAATCAAC TGTCCTGCCC TGATTTTGTC
GATACAGTGA CCAACGTATT GGATATCACA AAATTACCCG CCAGTAACCT AACACTGGAG
ATCACCGAGT CGCGCATTAT TGATAGCGCA CCAACCACAC TGGAAAATAT GACCAAACTG
CGTGATATGG GGATTGGTAT CGCGATCGAT GATTTCGGTA CCGGTTACTC ATCACTGGGT
TATCTTCATT CACTGCCATT TACTTGTTTG AAGATTGATC GCACCTTCAT CAATCAACTC
ACGCAAGAAA ACTTAGACAG TTCGGTCGTT GCTGCGGTCA TCAATATCAC CGCGGGCCTC
AAAACCAATG TCGTCGCAGA AGGCGTAGAG GATAGCAATC AAGCACAATT ACTGCGCTCT
TTAGGCTGCA ACCAAGTGCA AGGCTTCTAT TACAGCCGTC CAATGCCACT AGAAGAGTGG
CCAACACATT TGGTTAACAT GAAGTAG
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| Protein sequence | MSTATTQITL RTAVLIPFVM IFLLAIGVIV YVQKQSYEEV VTDISDKQLS VLTESVHDHL
NSYLRKPFTA VMALAHNVSY HNLYHPHDTS DIQSYLLSAF KNLYQSIPQL DVIAFGSESG
DFAGFRRELS DDYTLMVQDR YTDGDLIIYG TNHVSNSIRT VISPYDPRTR PWYTPVAETQ
TSMWSEIYTN ADERQDITLS AMTPVYKHDQ FAGVLVTDIR INTFNEFLRE LKYNTKASVY
IMDPEHRLIA HSGPGSVISW GTKFSDKGQR LFAAENADPI IKISASRVRS FDLNNTKQPY
TFSFEHDGQR IFSRLTPYRD QNGLTWFIGT SISESELLGT LPKSQQKSWL VGFIVSLFGI
AISWIIFNRV TRPINATADA AQHLANGDWD SSMPKPGYVY ETTVLVHAFN EMTSNLRASF
KALREQLVYD SLTRLYSRQG LVEICENQSH LCHGSLFLLG INKFRDINDS VGHHNGDQLL
VSIAERLKQE FSDNALLARI GGDEFAVFLS NADTEAKVKQ TERRLQQLFS TPFMVEGENV
VMKISLGIVQ TQPNETMPLW LRNASIALSY AKQDSLTGVC HYSPELASAS KFRTQMLTKI
QTGIENQEFV PHYQPIVDLA SGNVCGAEAL ARWHSDSGMV SPLDFIPIAE ESGMIKAIGQ
QILLQACRDT YQAIQSNQWP SDFQLHVNIS VNQLSCPDFV DTVTNVLDIT KLPASNLTLE
ITESRIIDSA PTTLENMTKL RDMGIGIAID DFGTGYSSLG YLHSLPFTCL KIDRTFINQL
TQENLDSSVV AAVINITAGL KTNVVAEGVE DSNQAQLLRS LGCNQVQGFY YSRPMPLEEW
PTHLVNMK
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