| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_001805 |
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| Symbol | |
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| ID | 8555434 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | - |
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| Start bp | 196768 |
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| End bp | 197910 |
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| Gene Length | 1143 bp |
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| Protein Length | 380 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 646404798 |
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| Product | lipopolysaccharide biosynthesis protein rffA |
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| Protein accession | YP_003284433 |
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| Protein GI | 262392579 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0399] Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis |
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| TIGRFAM ID | [TIGR02379] TDP-4-keto-6-deoxy-D-glucose transaminase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTCCAT TTAATAAGCC CCCAGTTGTA GGTAAAGAGC TTAGCTTTAT TGAGCAAGCT
ATCCAAGGAA GTAAACTCTC GGGAGATGGG CCACTTTCTG AACGATGCGA GAGTTGGTTT
GAAAACAGAG CGAGCTGTAT TAAGACTTTG TTAACGCCTT CATGTACCCA TGCGCTTGAA
CTCGCCGCTT TACTGATCGA TATTCAGCCT GGTGATGAAG TGATTATGCC AAGCTACACT
TTTGTTAGCA CTGCGAATGC ATTTGTACTG CGTGGTGCAA AAGTGGTGTT TGTTGATATT
CGTCCAGATA CGATGAACAT TGATGAAACC AAAATTGAGG CTGCAATCAC TGAAAAAACG
GTTGCTATTG TACCTGTACA TTATGCTGGT GTTGCTTGTG AGATGGACAC GATCATGAGT
ATTGCAGAGA AGTATAAACT CATTGTTATT GAAGATGCGG CTCAAGGTGT GATGTCTACT
TACAAAGGGA AAGCGTTGGG GGCAATTGGC CATCTAGGTG CATATAGTTT TCATGAGACG
AAAAATTATA CGTCCGGTGG TGAAGGTGGA CTACTTCTTA TTAATGACCA ATCTTTTGTT
GAGCGTGCAG AAATTGTCAG AGAGAAGGGG ACGAACCGAA GTTTGTTCTT CCGTGGCATG
GTAGACAAAT ATACTTGGGT TGATCTTGGT AGTAGTTTGC TTCCAAGTGA GATACAAGCA
GCATACCTTT GGGGGCAGCT TGAAGAAGCT GAAGGGATTA ACCAAAGACG GCTACAAATT
TGGCGAAAAT ATCTAGATGA GCTTACGCCT CTTGCCGCAA AACACAATAT AGAAGTGCCA
ACTGTTCCTT TTGAATGTCA GCACAATGCG CATATGTTCT ACTTGAAACT GGAAAATCTG
GAATTGAGAA GCCAGTTTAT TGAAATGCTT CGTGAAGAGG GCATAGTCTC TGCGTTTCAC
TATATTCCAT TGCATAGCTC ACCAGCTGGC CAACAGTTTG GTCGGTTTGT CGGCAGTGAT
ATATATACGA CACAAGAAAG TGAGCGCTTG GTAAGGCTAC CACTGTACTT CAATATGAGT
GATAGTGAGC AGTCGTATGT TATTAATGCT ATAAAAAATG TTTTAGGGCG TATGGAATTG
TAA
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| Protein sequence | MIPFNKPPVV GKELSFIEQA IQGSKLSGDG PLSERCESWF ENRASCIKTL LTPSCTHALE
LAALLIDIQP GDEVIMPSYT FVSTANAFVL RGAKVVFVDI RPDTMNIDET KIEAAITEKT
VAIVPVHYAG VACEMDTIMS IAEKYKLIVI EDAAQGVMST YKGKALGAIG HLGAYSFHET
KNYTSGGEGG LLLINDQSFV ERAEIVREKG TNRSLFFRGM VDKYTWVDLG SSLLPSEIQA
AYLWGQLEEA EGINQRRLQI WRKYLDELTP LAAKHNIEVP TVPFECQHNA HMFYLKLENL
ELRSQFIEML REEGIVSAFH YIPLHSSPAG QQFGRFVGSD IYTTQESERL VRLPLYFNMS
DSEQSYVINA IKNVLGRMEL
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