| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_001784 |
|---|
| Symbol | |
|---|
| ID | 8555413 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | - |
|---|
| Start bp | 173494 |
|---|
| End bp | 174276 |
|---|
| Gene Length | 783 bp |
|---|
| Protein Length | 260 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 646404777 |
|---|
| Product | capsular polysaccharide ABC transporter permease protein KpsM |
|---|
| Protein accession | YP_003284412 |
|---|
| Protein GI | 262392558 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1682] ABC-type polysaccharide/polyol phosphate export systems, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGACC TAAGACAGGC TTTAAGAGTG CAAGGGCGAG TCTTGTACGC CCTTATTTTG
CGTGAAGCGC TCGGAAAATA TGGTAAGAGT AGGATTGGTT ATCTGTGGGC TTTATTTGAA
CCATTAACCC AAGTTCTTAT CTTAGTAGCC ATATTCTCCG CGTTAGGAAG AAAGTCACCA
GTTGGAGGTG ATTTGGCTAT TTTTTTTACA ACAGGAATAG TACCTTGGCT TATATATAGC
AATATCGCAA ATAGGTTATC GGGAGCCCTA GGGGCTAATC AAGCCCTACT CGCATATCCG
CATGTTACAC CTTTTGATGT TCTTATGGGG AGAGCTCTAC TTGAATCGAT TACTATGCTA
GTTGTATTTG CCTTGATAAT AGTATCTCTA CAGCTAATAG GGAAAGCATT AGCGATTTAT
GATCTCTTTA ATGTTTTAAT GGGATTAATT ACACTAGTTC TATTTTCTGT CGGCTTAGGA
ATGACGAACT CCGCAATTCG AATTTATTTT GATAGTTGGG ACAAGTTGTT TAGTGCGATA
AACAGGCCTC TTTATTTTAT CTCTGGTATT TTCTTTACAG CAGCTAGTTT GCCTCCTCAA
GCCAGAGAAT ATCTTCAGTG GAATCCATTG TTCCAATATG TTGAATGGGT TAGAAGTGGT
TTCTTTTCTA CTTATCAAAA CGTTTATATA AATCATCATT ATGCTATATC CTGTTCTGCA
GGAATGCTGT TGATAGGATT GGCATTAACG CAATATACAA AAGAGCAAGC ACGTAACTTA
TGA
|
|---|
| Protein sequence | MKDLRQALRV QGRVLYALIL REALGKYGKS RIGYLWALFE PLTQVLILVA IFSALGRKSP
VGGDLAIFFT TGIVPWLIYS NIANRLSGAL GANQALLAYP HVTPFDVLMG RALLESITML
VVFALIIVSL QLIGKALAIY DLFNVLMGLI TLVLFSVGLG MTNSAIRIYF DSWDKLFSAI
NRPLYFISGI FFTAASLPPQ AREYLQWNPL FQYVEWVRSG FFSTYQNVYI NHHYAISCSA
GMLLIGLALT QYTKEQARNL
|
|---|
| |