Gene VEA_001647 details

Gene Information

• Locus tag: VEA_001647
• ID: 8555276
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio sp. Ex25
• Kingdom: Bacteria
• Replicon accession: NC_013456
• Strand: -
• Start bp: 42098
• End bp: 43978
• Gene Length: 1881 bp
• Protein Length: 626 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 646404640
• Product: sensory box/GGDEF family protein
• Protein accession: YP_003284275
• Protein GI: 262392421
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2199] FOG: GGDEF domain
• TIGRFAM ID: [TIGR00229] PAS domain S-box; [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.00111686
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAAAATAC CTAAGCGAGT CGGCACATTG TTGGCGACAG CACTATTTTT TAGTGCGCTC 
ACTGCAGTTT ACTATTATCA GAAATATCTG ACGTTATTAG AGAGTAACGT TGAGAATACC 
GCTCAAGAAG CATTACACCA ACTGGCTTAT ACTGGTCGCG AATACAACAA TATTCAGGAT 
CAAATTGAGA CGATCAGCGA TCTTCTCGGT CACAGCCAAA GTCTTTACGA CTATCTACGT 
CAGCCGAACC GAGTCAACCT TTCTATCTTA GAAGATATGT GGATCTCGGT TGCGATCAAC 
CAAAAGCTAT ATAAACAAAT TCGTTTTCTT GATATTACCG GTCAGGAAAA AGCACGGATT 
AATTACGATT TCAAAACGGG TATCGCTGCA CCCGCCCTCA AATTACATGA CAAGTCAGAG 
CGGGATTATT TTCATTACGC GCAAGGTTTA GGTAATGATG AAATTGCGTC GTGGGGGATT 
GAGCTGGAGC GGGAAAATGG TGAGCTTGTT TACCCTTATA GCCCTTCATT GCGTATTCTG 
ATGCCGATTT CTCTCAATGG GAAACGCGAA GGGTATCTTG TTCTTAATGT TGATATTGAG 
TATTTATCTT CTCGACTCAA CTACTCACCG GTGCGGGATT TTCATATTGA GTTAATTAAA 
AGTGATGGCT TTTATATCGC TAGTCCTAAG TCATCACGCT TGTACGGCAA TATTATCCCA 
GCTCGTTCTC AATTTAATTT TGGCCGGATG TACCCCAACA TTTGGCGCAC GATGATCTCA 
GAAGTTTCGG GCTATGAGTA CAACGGCTCG AATTTGATTG CGTATAGCAC GATCCAATTT 
GTTTCTAGTG AACCACTTCA TCTGGTTATT GATCTTACCA ATGAGCAATT ATTATCTCGA 
TCTCAGCGAG ATATTGATGA CTTAATCCAA GAAGCGTTTT TTGTATTAAG TTTGGTGTTT 
GGTTTTACTT TACCAACGAC CGCGCTAGCC CTGCACTATC GACGTCATAG TATGGAATCT 
AAGTTAGCTC GGGCTGCACT TGATGGCATG ACTGCGGTGA TGATCTCAGA TGCGTCGCAC 
CGAATCATTA TGGTGAACCA AGAATTTGAA AACATGATGG GCTATTCCAC CAAGCATACT 
CAAGGCTGGA ATGCGCATAA TCTAATTTTC TTACCGGAAG ATCTCGAGTC GACCCTCAAT 
ATTTGGAATA AGCTTGCGAA CGAGCACGTT TGGGAAGGTG AGGTTCGTTG TCGAACCAAG 
TTTAATCACG TATTTACCGC CATTATGCGC ATTCAGGCAA ACTTAACCAA GTCAGGTAAA 
GTAAGCTATT ACATCACGTC GCTGGTGGAT ATATCCGAGC AAAAAGAGCT GGAAGAAAAG 
CTACGCAACC TCAGTGAAAA AGATGGTTTG ACGGGCTTGT GGAACCGCCG AAAATTTGAA 
GAGCAATTAG CGCAATATGC CGGGATTATT GAGCGTTATC CTGACAGTCC CCCAGCGTGT 
TTGGCGTTGT TTGATATTGA CCACTTTAAG CGCATTAACG ATGAACTTGG GCACGATGAA 
GGGGACAAAG TGATTTGCAG TGTCGCTGAG ACTCTTCTTA AAGAGGTGCG CAGTACTGAC 
TTTGTGTCTC GTGTCGGTGG TGAGGAATTT GCGGTGATCA TGCCGCATAC CACACTCGAA 
GAAGCAGAAG TTGTATTGAA CCGGTTACGT GTGGCGGTTC AACTGCGCAG TGATAGAGCG 
ATTACCGTTA GCGCCGGGTA TAGTGATTTA ACCTCCGATC GCACGCGTAC TTATAAATGT 
GCTGATATTG CCTTGTATGA ATCCAAAAGT GCAGGGCGTA ACTGCGTATC GCTATGCCAT 
AGTTTCGATG ATATTGCTTA G 

 

Protein sequence

MKIPKRVGTL LATALFFSAL TAVYYYQKYL TLLESNVENT AQEALHQLAY TGREYNNIQD 
QIETISDLLG HSQSLYDYLR QPNRVNLSIL EDMWISVAIN QKLYKQIRFL DITGQEKARI 
NYDFKTGIAA PALKLHDKSE RDYFHYAQGL GNDEIASWGI ELERENGELV YPYSPSLRIL 
MPISLNGKRE GYLVLNVDIE YLSSRLNYSP VRDFHIELIK SDGFYIASPK SSRLYGNIIP 
ARSQFNFGRM YPNIWRTMIS EVSGYEYNGS NLIAYSTIQF VSSEPLHLVI DLTNEQLLSR 
SQRDIDDLIQ EAFFVLSLVF GFTLPTTALA LHYRRHSMES KLARAALDGM TAVMISDASH 
RIIMVNQEFE NMMGYSTKHT QGWNAHNLIF LPEDLESTLN IWNKLANEHV WEGEVRCRTK 
FNHVFTAIMR IQANLTKSGK VSYYITSLVD ISEQKELEEK LRNLSEKDGL TGLWNRRKFE 
EQLAQYAGII ERYPDSPPAC LALFDIDHFK RINDELGHDE GDKVICSVAE TLLKEVRSTD 
FVSRVGGEEF AVIMPHTTLE EAEVVLNRLR VAVQLRSDRA ITVSAGYSDL TSDRTRTYKC 
ADIALYESKS AGRNCVSLCH SFDDIA