Gene VEA_001646 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVEA_001646 
Symbol 
ID8555275 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio sp. Ex25 
KingdomBacteria 
Replicon accessionNC_013456 
Strand+ 
Start bp41389 
End bp42033 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content45% 
IMG OID646404639 
Producttranscriptional regulator LuxZ 
Protein accessionYP_003284274 
Protein GI262392420 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones2 
Plasmid unclonability p-value0.00000706033 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATCCGTC AGGATATTCT CGATGGCGTG CTTAAACCGG GTCAAAAACT CGTGGTTGCG 
GAACTCAAAG AGAAGTACAA CGTAGGAGCG TCACCCATTC GCGAAGCTTT GGTGCAGTTA 
TCGTGGAGCA AATACGTCAA ACTCGAGCCG CAAAAAGGCT GCTGGGTTGC ACCTGTATGT 
AAAGATGAGT TGAATGACTT GTACGAGAGC CTACAAATGG TCTCTGCATG CCTACTAAAT 
AAAGCAATTG TGATTGGCGA TGAAAATTGG GAACTGGACG TCCTAACCGC TTATCACAAG 
TTATCCCGCT CTAAATCTGG CGAAAGCTTT TGCTGGAAGG AATGGGAAGA ACGCCATAAT 
CAGTTTCTTA CTGCGCTGTT TGAAGGCGCT GGCTCTGCCA ATATGTTTGG TTTTTTCCGC 
GATCTACTCA CGCAAATTAA GCGTTACCAA TATTTTGCTA TGCAAATGTT AGGTACTGGA 
AACCCAGGGC ACTGTAATAT CGATGAACAA GAAATGCTGA TGAAGACGTC GTTAGATAAA 
AAGAGCCAGG ATGCTTTAGG TTATCTAGAG CGTTATTTGA GACAGTCAAT GCAGTGTATC 
GAAGCAGCCA TCGACAACCA ATATCGCATA CTGGCTAGCG AATAA
 
Protein sequence
MIRQDILDGV LKPGQKLVVA ELKEKYNVGA SPIREALVQL SWSKYVKLEP QKGCWVAPVC 
KDELNDLYES LQMVSACLLN KAIVIGDENW ELDVLTAYHK LSRSKSGESF CWKEWEERHN 
QFLTALFEGA GSANMFGFFR DLLTQIKRYQ YFAMQMLGTG NPGHCNIDEQ EMLMKTSLDK 
KSQDALGYLE RYLRQSMQCI EAAIDNQYRI LASE