| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbro_3748 |
|---|
| Symbol | |
|---|
| ID | 8553129 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gordonia bronchialis DSM 43247 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013441 |
|---|
| Strand | - |
|---|
| Start bp | 4034091 |
|---|
| End bp | 4035545 |
|---|
| Gene Length | 1455 bp |
|---|
| Protein Length | 484 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | |
|---|
| Product | alpha amylase catalytic region |
|---|
| Protein accession | YP_003274822 |
|---|
| Protein GI | 262203614 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAGCTTC CGCCGTCCCC GCTCATCTAC GAGATCAACA CCTGGCCGTG GCTGACCGAG
TTGGCGCGGC TCACCGGCCG CCCGGTCGAT CTCGCGTCCG TACCCGACGA TCAGTGGGAC
GCCATCGCTG CACTCGGCTT CGACGCGGTG TGGCTGATGG GGGTGTGGCG GCGCAGCCCG
GCCGGGGTGG CGATCGCGCG GGCCGACAAG CTGCTGATGG AGTGGTTCGC GCGGTCGCTG
GACGACTTCA CCGACGACGA CGTCGTCGGA TCGCCGTACT GCGTGTGCGA CTACGTCGTC
GACGATCATC TCGGCGGTGA TGACGCGCTG GCCGTCGCGC GAGAGCAACT CGCCCGGCGC
GGCGTCGGGC TCATCCTGGA CTTCGTCCCC AATCACGTTG CCCTCGACCA TCCCTGGACG
GCACAGCCCG AGTGGTTCAT CCGTGGCAGC GCCGACGATC TGGAGCGTGA TCCGCACTCG
TATGTGACCG TCGACGGGGG TGCGGTGCTG GCCAATGGGC GTGACCCGCA CTTCCCGGCG
TGGCGGGACG TGGTTCAGGT GAACGCCTAT GCGCCCGGTC TGCGCGCGGC CGCGGCCGAC
ACGCTGCGGC AGATCGCCGG ACGATGCGAC GGGGTGCGCT GCGACATGGC GATGCTCATG
ATGAACGACA TCGTCGCGCG GACCTGGGGC GAGGCAGCCG GCGCGATCCC CGACGCGGAC
TACTGGCCGC CGATCATCGA CGCAGTCCGG GCCGGGCACC CAGGTTTTGT ATTCATCGCC
GAGGCGTACT GGGGTACCGA GGCGGCGCTG GCCGCACAGG GATTCGACTT CTGCTACGAC
AAGACGCTCT ACGACGTGCT CGCCCACGAC CCGGCTCGAT TACGGCCGAC GCTCGGAGCT
GACGGGCGAA CACCGCAGCG ACTGGTGCGG TTCATCGAGA ACCACGACGA GGACCGGGCC
GCGGTCGTCT TCTCCGACCG TGACCGGATG GCCGCGGTCA CCGCGCTGAC CCAGGCGGGG
GCACGGTTGG TGCATCAGGG GCAGATGGAG GGCCGTCGGG CCCGGGTCCC GGTGCAGCTG
AGGCGGTTTC GCGATGAACC CGTCGACGCC GACCGCGCAG TCTTCTACCG TGCGCTGCTC
GCGGCGCTGG CCGATCCGGT GTTCTCCCAC GGTGAGTGGC GGCTGTGCGA CGTGCGCGGC
TCGTCGGATG CGGTGGTCGC GTGGGAGCGG GCCGGCCAGA CCCGCTGGGT CGTCGCCGTC
AATGTCGGAG ACCGGCCGGC GACCCTGACC CTGGCGGGCT TCGCCGACGT ACCGGTTGTG
GAGAGCCCGC TCACCGGCGA GCAGGTCCGG GTGTCGCCGG ACGGGGTGCT CGCGGTTTCG
CTGATGGCGT GGGGCTGGCA GCTTTACCGG GCCCGGCCGG GGTCCGGTGC GGCACCTGTC
GGCCGATCGG ATTAG
|
|---|
| Protein sequence | MKLPPSPLIY EINTWPWLTE LARLTGRPVD LASVPDDQWD AIAALGFDAV WLMGVWRRSP
AGVAIARADK LLMEWFARSL DDFTDDDVVG SPYCVCDYVV DDHLGGDDAL AVAREQLARR
GVGLILDFVP NHVALDHPWT AQPEWFIRGS ADDLERDPHS YVTVDGGAVL ANGRDPHFPA
WRDVVQVNAY APGLRAAAAD TLRQIAGRCD GVRCDMAMLM MNDIVARTWG EAAGAIPDAD
YWPPIIDAVR AGHPGFVFIA EAYWGTEAAL AAQGFDFCYD KTLYDVLAHD PARLRPTLGA
DGRTPQRLVR FIENHDEDRA AVVFSDRDRM AAVTALTQAG ARLVHQGQME GRRARVPVQL
RRFRDEPVDA DRAVFYRALL AALADPVFSH GEWRLCDVRG SSDAVVAWER AGQTRWVVAV
NVGDRPATLT LAGFADVPVV ESPLTGEQVR VSPDGVLAVS LMAWGWQLYR ARPGSGAAPV
GRSD
|
|---|
| |