| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_6872 |
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| Symbol | |
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| ID | 8549296 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haliangium ochraceum DSM 14365 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013440 |
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| Strand | + |
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| Start bp | 9408967 |
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| End bp | 9413346 |
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| Gene Length | 4380 bp |
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| Protein Length | 1459 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 646391537 |
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| Product | Tetratricopeptide TPR_2 repeat protein |
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| Protein accession | YP_003271229 |
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| Protein GI | 262200020 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0457] FOG: TPR repeat |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.795402 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTGGCA AGATGGCGCC GCCCAGCGTC CCGGTGACGC TGGCCCCCCC GGGCGCCAAG
CCGGGCGCCA AGCCGGCTCC GCCCGCAGCT CAGGGCAATG ACGACATCGG CCTGGGCGGC
TCGGGCAACG AGGCCGCGAG CAGCGCCGCG CCCGAACCCG AGGTCAAGGC GCCCAACCTC
GATCTCGGCG CCCCCGGCGA TGCCGATATC GTCCGGCCGA CGCTGCCGCC CAGCGCCGAC
GATGTCGATC TCGGGCACTC GGGCAATGAG GATTACGACG ACGAGCCCAA CGAGTTCCTC
GACCTCAGCC CCGCGGCCGC CGACGACGAC CTGCTCGATC TCGGCGCCCC GGGCTCGAAC
GACGCAGAGC GCAAGCTGGC CCGCGACACC GCCGCGACCA TGGATATCGG CCCGCTCGGC
ATCGGCGACC TCGATGTCGG CGCTGCCGAT CTGCCCGTGA GCGCCGGCAA ACGCGGCAGC
GAGGGCGCCG ATCTCCCAGC CCCGCTCGAG GATCCCGAGA TCTTCGATCT GCCCGCGCCG
CTCGAGGCCG CCGACGACGA TGCCGATCTG CCCGCGCCCA GCCACGTCGC GCGGCAGCCT
TCGGCCGATC TGCCCGCGCC CTCCATGCGC CGAGCCTCGG CCGAGTTGCC GACCCCGGCC
GCGCGCCCGT CGCTGAGCGA TCTGCCCGCG CCCTCTGCGC GCGGCGGCAG CGACCTCCCG
GCTCCGCGCG GCGCCGGCGC GAGCGCTCTC GACCTGCCCG CTCCGGCCGG CGGCGCCGAG
CTGCCGCAAG CCGCGGGCAA CGCCATCGAC CTGCCCGGCG ATATCGGCCT CGATCTACCG
GCCTCCTCCG CCGAGCTGCC GGCCTCCTCT GCCGAGCTGC CGGCCTCGGC CGACGACTTC
TTCGGCGACC TGCCCCAGGC GGCCCAGGAC TCCCTGCCGA CGCCGGCGAG CGAGCTGCCC
GCCGCCACCG GCGAGCTGCC CGCGCCCACC GACGACTTCT TCGGCGACCT GCCCCGGCCG
GCCGGCACGG GTGCATCGCC CGCTGGCAAC CGCTCTGGGG CCGGCGCTGA GCTGCCGGCC
TCGGCCGACG ACTTCTTCGG CGATCTGCCC CAGACCGCGG CCGCGCCCCC GGCCGCGAGC
CAGGCGGGCG CCGAGCTGGA CGATCCGCTC GGCGGCGACG ACTTCGACCC GCTGGGCGAC
ATCGGCCTGG GCCTGGGCTC GGGCGACGCC GACGCGCGCA GCGACTTCAA CCCGCCCGAC
GTGTCCAAGC CGGCCGCGCC CTCGCCCGCC GGTGGCGGCC TCGACGACGA TCCCTTCGGT
CTCGGCGACA GCAGCAGCCC GCTGTCGCTG TCCACCGACG ACGGCCCGGC GCCCGCCAAA
TCGGCCGACG ACGCCATGTC TCTGGGAGGG CTCGAGCTCG AGCCCTCGCG CGAAGACGAC
CCGCTCGGCA TGGCGTCCAT CCCGCTCGAC CACGGCGGCG CCTCGCCATC ACCCGCGCAG
GCCAGCGCCG AGAAGAGCGG TATCGACGAC CTCGGCGACA TGGGTCTCGG CGGCGGCGAC
GATACCCTTG GCCTGGATCT CGGTCTGCCC GATCCCGGCA GCATGGCGGG CGCGCCGGCG
CCGCCCCCGA CCGCGGCCAA AGCGCCGGCT CCGGCGGCCG ACGCCGGCGG CGACGACTTC
GGTCTGCCCA GCATCAGCGG CGGCGGCGAC GACTTAGGTC TGCCCAGTAT CCCGGCCTCC
TCCGAGGCGC CCAGGGCCAA ACCCAAAGCC AAAGCCAAGC CCAAGACCAA GCCCAAACCC
GAGCGCCGTC GCCCGGGCCG GCGCGGCGAG AAGGAGCCAG AGGAGAAGCT CGACCTCGAG
GACACCGCGA TCCCGCGTGT CCAGCAGGGG CACATGGCCG CGTCCGCGCT CACCGAGCGC
CACCTGATCC GCCGCCGCCA GCGGCGCAGG CGCATCATCA TGTCGGTGGC CGCGGTCCTG
GTGCTGGCCG CGGGCACCGG CGGCTTCTTC GTGTATCGCA GCTGGGCCGC GCAGCAGGAG
ATCGCCGCCA ACCTCAGCGA GCAGCGGAGT GCGGCGCTGG CCGCGCTGCA GGCAGGCGAG
CCCGATCACT GGGAACGCGC CGTCGCCGCC GCCGACAAGG CGCTCGCGGT CGCGCCCCAA
GATCCCGACG CGCTGGGCAT CGCGGCGCAG GGCGCGTACG CGGCTATCAT CGATCAGGGC
CGCGACGCCG AGCGCTGGCG CCAGGCCGGT CTCGACTACA CGCGCCGCAT CGACGACAGC
TCGCTCGGCG GCGCTCACGT GGACAAGGCG CAGGCGCTCA AATCCATCGA TCAGGGCCGC
CCGGCGGCCG CCATCAGCCG TCTGCAGCAG GTGCTCTCGC GGACGCCGAA CGACCCCGAC
GCGGTGCTCT ACCAGGGCTG GGCGCACGCC GCCGCGCGCG ACAACACACA GGCCGCGCAG
TTCTTTGAAA AATCCCTGGA GCTGTCCCCG AAGCGCCCGC TGCCGGCCCT CTACGGTCTG
GGCCGTGCGC AGCTTGCCCA GGGCGATCGG GACAGCGCGC GGGCGACCTT TGCCCAGATC
CTCGAACAGC GCGAGAGTCA CCTGGGCGCG CTGGTCGGCG CCGCCCAGGC CGCCGATGTC
GGCGGCAGCG ACAAACGCGA GGCCAAGCTG CTCGAGATCG TCAACCGCCC CGACGCGGCC
GAGGGCGATC CCCGCGAGCT GTCGCGGGCG TGGTCACTGG CCGCCTACAT CTCGCTCGAC
AGCGGCCGCA TCGACGAGGC CGGCCGACGC TTCGAGCAGG CCATCAACGC CCACCCGGCC
AACGTCAACG CCCTGGTCGG CCGGGCCCGC GTCGCGCTCG CCCAGGAGCG CTACGAGGAC
GCCACCGAGC AGCTCACCCG CGTGATCGGT ACCGATCTCA ACGCCGTCGA TCCGGTGCGT
AATCTCGACG CCCTGCTCAC CCTCACCGAG CTGGCCATGC GCACCGACAA GCCCGACGAG
GCCACCGCCC ATCTCGAGCG CGTCTTCGCC GCCAAGGAGC AGATCGACGA CCGCCGCGGG
CTGTCCCGGG CCTACGTGAT GCAAGGCCAG ATCCTCGGCG CCGACGAGAG TCAGCGCGAG
GCCGCGATCG CGGCCTACGA GGAGGCCCTG ACGCTGGCCG GCGACGACGC CCTGGAATCG
GCGCTCGCGC TCGCCGACCT GTACACCTTG CTCGGCCGCA TGGAGAAAGC GCGCGCCGTT
CTCGCCCCGG TCGAGCGCCG CGCCGCCAGC GACGCCGCGG CATCGGTGGC GCTCGGCATT
CGCTACATGC GCGCCAACGC CTGGACCGAC GCCGAGACCT GGCTGCGCAA GGCGCTCGAG
CTCGAGCCCG GCGACGTCGA CGCGCAGTTC CAGCTCGGTC AGGTCCTGGC CTCGCTGGAG
CGCTACGACG AGGCCTTTGA GATGCTCAAG AGCGCGGCCG AGGCCGCTCC CGAGCGCTCC
GATATCGGCC TGCGTCTGGC CATCCAGTAC GAGAAGCTCG ACCGCGACGA GGAGGCCGCC
GCCGCCTACG AGCAGCTCCT CAGCACCTCC TCGCCCACCG TGGATACGCT GGCGCGCGCC
GGCCGCTTCT ACGCCCGCCA GGGCCAGACC GACAAAGCCG GCGAGATCGG CGAGCGCATC
CTGGCCATCA AAGACACCGC CGCCGCCGGC CACTACCTGC TCGGCGAGGG CCAGTTCGCC
CAGGGCGAAC ACGCCGCCGC CCGCGACAGC TTCCGCCGCG CCGCCGACAT CGAGCAAGAC
CCCCAGTACC TGGAGGCCAC CGCGCGCGCG GCCGAGCGCA TGGAGCTCTA CGACGAGGCC
TTCGAGGCCT ACTCCGAAGC CTCGCGACGC GCGCCCGAGT ACATTGCCCC GCGGCTGGGT
CGCGCGCGCC TGCTCATCGC CCGCCGCGAC TTCCAGCGCG CTACCGAAGA ACTCGAAGAC
CTGCGCAAGA TCGCGCCCAA CGAGGCCAGC GTGTTCCACT ACCTGGGCGA GAGCCTGCAG
GCGCAGGAGA AGCACAAAGA GGCGATCTCG TACTTCCGTA CCGCGCTCGG CATCGACGGC
AGGCGCGCCG AGACCCACTA CCGCCTCGGC AAGTCGTACA TCGAACGCGG CGACGAGCGC
GACGCCGCCA GCGAGTTCAC CACCGCCACC CAGATCGCCC GCAACAGCGC GACGCCGCCG
TCGTGGCTGG TCGATGCCTA CTACGAGCTG GGCTACGTGC AGCGCGCGCT GAGCCGGCGC
GGCGAAGCCG TCCGCGCCTG GGACGCGTAT CTCGAGCTGG TGCCCGAGGC CGAGCAGAAC
GAGACCAAGG TCAAAGAGGT CAAGCGGCTG CTCATGGGTC TCAAGGCACA GCTCCGATAG
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| Protein sequence | MPGKMAPPSV PVTLAPPGAK PGAKPAPPAA QGNDDIGLGG SGNEAASSAA PEPEVKAPNL
DLGAPGDADI VRPTLPPSAD DVDLGHSGNE DYDDEPNEFL DLSPAAADDD LLDLGAPGSN
DAERKLARDT AATMDIGPLG IGDLDVGAAD LPVSAGKRGS EGADLPAPLE DPEIFDLPAP
LEAADDDADL PAPSHVARQP SADLPAPSMR RASAELPTPA ARPSLSDLPA PSARGGSDLP
APRGAGASAL DLPAPAGGAE LPQAAGNAID LPGDIGLDLP ASSAELPASS AELPASADDF
FGDLPQAAQD SLPTPASELP AATGELPAPT DDFFGDLPRP AGTGASPAGN RSGAGAELPA
SADDFFGDLP QTAAAPPAAS QAGAELDDPL GGDDFDPLGD IGLGLGSGDA DARSDFNPPD
VSKPAAPSPA GGGLDDDPFG LGDSSSPLSL STDDGPAPAK SADDAMSLGG LELEPSREDD
PLGMASIPLD HGGASPSPAQ ASAEKSGIDD LGDMGLGGGD DTLGLDLGLP DPGSMAGAPA
PPPTAAKAPA PAADAGGDDF GLPSISGGGD DLGLPSIPAS SEAPRAKPKA KAKPKTKPKP
ERRRPGRRGE KEPEEKLDLE DTAIPRVQQG HMAASALTER HLIRRRQRRR RIIMSVAAVL
VLAAGTGGFF VYRSWAAQQE IAANLSEQRS AALAALQAGE PDHWERAVAA ADKALAVAPQ
DPDALGIAAQ GAYAAIIDQG RDAERWRQAG LDYTRRIDDS SLGGAHVDKA QALKSIDQGR
PAAAISRLQQ VLSRTPNDPD AVLYQGWAHA AARDNTQAAQ FFEKSLELSP KRPLPALYGL
GRAQLAQGDR DSARATFAQI LEQRESHLGA LVGAAQAADV GGSDKREAKL LEIVNRPDAA
EGDPRELSRA WSLAAYISLD SGRIDEAGRR FEQAINAHPA NVNALVGRAR VALAQERYED
ATEQLTRVIG TDLNAVDPVR NLDALLTLTE LAMRTDKPDE ATAHLERVFA AKEQIDDRRG
LSRAYVMQGQ ILGADESQRE AAIAAYEEAL TLAGDDALES ALALADLYTL LGRMEKARAV
LAPVERRAAS DAAASVALGI RYMRANAWTD AETWLRKALE LEPGDVDAQF QLGQVLASLE
RYDEAFEMLK SAAEAAPERS DIGLRLAIQY EKLDRDEEAA AAYEQLLSTS SPTVDTLARA
GRFYARQGQT DKAGEIGERI LAIKDTAAAG HYLLGEGQFA QGEHAAARDS FRRAADIEQD
PQYLEATARA AERMELYDEA FEAYSEASRR APEYIAPRLG RARLLIARRD FQRATEELED
LRKIAPNEAS VFHYLGESLQ AQEKHKEAIS YFRTALGIDG RRAETHYRLG KSYIERGDER
DAASEFTTAT QIARNSATPP SWLVDAYYEL GYVQRALSRR GEAVRAWDAY LELVPEAEQN
ETKVKEVKRL LMGLKAQLR
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