Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hoch_6864 |
Symbol | |
ID | 8549283 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Haliangium ochraceum DSM 14365 |
Kingdom | Bacteria |
Replicon accession | NC_013440 |
Strand | + |
Start bp | 9398777 |
End bp | 9400615 |
Gene Length | 1839 bp |
Protein Length | 612 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 646391524 |
Product | oligoendopeptidase, pepF/M3 family |
Protein accession | YP_003271221 |
Protein GI | 262200012 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1164] Oligoendopeptidase F |
TIGRFAM ID | [TIGR02290] oligoendopeptidase, pepF/M3 family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.176327 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAACCAGC CAAGCGATGC AGCCGAGGTC CCGCGGCCCA ACTGGGACAT GCGACCGTAC TTCACCTCAC CCGCCGGCCC CGACTACGCG GCCTTCTGGG ACATGTTGCG CACCAGCGTG GCCGAGCTCG GCCACGCCCT CGACGCCCTG CCCGCCCTGA GCGAGGACAG CGCGGCGCAG GACGCCTGGT CGGCCACCCT GCTCGAGCTC GAGGGCGTGC ACGCGCGCAT GCGGCACCTC GAGTCGTATC TCGACTGCAT GGCCTCGGCC GACGCCCACG ACGAAGTCAT CCGCGCCGAC GTCGGTCAAT TCGCGTCGCT ACAGGCGTCC TTCGCCGCGC TCGGCGTCCG GCTGCGCGCC GCGCTCGGCC ACGCCGATGA CGGCGCCGTG GCCGCGCTGC TCGAGCGCCC CGAGCTGAGC GCGGCCGAGC ACTGGCTGCG GCGCACCCGC GACAGCGCGC GCGAGTCCAT GAGCCCGGCG CTCGAAGAGC TGGCCACCGA GCTCGGCGTC GACGGCATCG CCGCCTGGGG GCGGCTCTAC GATCAGCTCT CGGGCACGCT GAGCTTCTCC CTCGAGGTCC CCGGCCGCGC GGCCGAAGAG CACCCGGTGT CGATGGCGCG CACGCTGCTC GAAGACCCCG ATCCCGCGGT CCGCCAGGCC GCGCTCGTGG GCTCGAACGC GGCCTGGGCC CGGGTGTCCG AGCCGGTGGC CGCGTGCCTC AACGCCATCG CCGGCACCCG GCTCACGCTC TACCGCCGCC GCGGCGTCGG CCATTACCTC GACCCCGCGC TGTTCGACGC CGCGATCACG CGCCGCACCC TCGACGCCAT GATGTCGGCC GTGCGCGGCC GGCGCGCGCG CATGCAGCGC TACCTGGGCA TCAAGGCGCG CCTGCTCGGC CGCGAGCGGC TGGGCTTTCA GGACCTGCTC GCGCCCCTGC CCGAGGACGC CGCGCCGCGC ATCTCCTGGG ACCAGGCGCG CGAGCGCGTG CTCGCCGCCT TCGGCACCCA CTACCCCGCC CTGCGCGAGT TCGCGGCCGA CGCCTTCGCC AAGCGCTGGC TCGATCACGA ACCGCGACGC GGCAAGCGGC CCGGCGGCTT CTGCTCCAGC TCGCCCGTGA TCGGCGAGTC GCGCGTCTTC ATGACCTATC ACGGCTCCAT GGGCGACCTC GAGACCCTAG CCCACGAGCT CGGTCACGCC TTCCATAGCT GGGTGATGCG CGATATGCGC CCGTGGGCCC GGGTCTACCC CATGACCCTG GCCGAGACCG CGTCGACCTT TGCCGAGCAG CTCGTGAGCG AGGCCATGCT CCAGGGCGGC GACGCCGATC CCGCGACCCA GCGCGCGGTG CTCGACAGCC GGCTGCAAAA GGCCGCGGTG TTTCTGCTCA ACATCCCCAT GCGCTTCGAC TTCGAGTGCG CGTTCTACGA GGCGCGGCAA CACGGCGAGG TCGGCGTCAC CCGGCTGTGC GAGCTGATGC GCGCGGCCCA GCGCGACAAC TACGGCGACG CGCTCGACCC CGATGCCCTC GACCCGTGGT TCTGGGCGTC GAAGCTGCAC TTCTACATCA CCGAGCTCAG CTTCTACAAT TTCCCGTATA CCTTCGGGTA CTTGTTCAGC CTCGGCATCT TCGCCCGGAC GCTCGGACAA GGACCGGAGG CGCTCGCGCG CTACGAGACG CTGCTGCGCC GCACCGGCAG CGCCAGCGCC GAGCAGGTAG CCCGCGAAGG CCTCGGCGTC GATCTCGAGA GCCCCGACTT CTGGAACGCC TCGCTCGATG TCATCGAGGC CGACCTGGGC CGCTTCGAGC AGCTCAGCGG CAAAGGCAGC GGCTCGTAA
|
Protein sequence | MNQPSDAAEV PRPNWDMRPY FTSPAGPDYA AFWDMLRTSV AELGHALDAL PALSEDSAAQ DAWSATLLEL EGVHARMRHL ESYLDCMASA DAHDEVIRAD VGQFASLQAS FAALGVRLRA ALGHADDGAV AALLERPELS AAEHWLRRTR DSARESMSPA LEELATELGV DGIAAWGRLY DQLSGTLSFS LEVPGRAAEE HPVSMARTLL EDPDPAVRQA ALVGSNAAWA RVSEPVAACL NAIAGTRLTL YRRRGVGHYL DPALFDAAIT RRTLDAMMSA VRGRRARMQR YLGIKARLLG RERLGFQDLL APLPEDAAPR ISWDQARERV LAAFGTHYPA LREFAADAFA KRWLDHEPRR GKRPGGFCSS SPVIGESRVF MTYHGSMGDL ETLAHELGHA FHSWVMRDMR PWARVYPMTL AETASTFAEQ LVSEAMLQGG DADPATQRAV LDSRLQKAAV FLLNIPMRFD FECAFYEARQ HGEVGVTRLC ELMRAAQRDN YGDALDPDAL DPWFWASKLH FYITELSFYN FPYTFGYLFS LGIFARTLGQ GPEALARYET LLRRTGSASA EQVAREGLGV DLESPDFWNA SLDVIEADLG RFEQLSGKGS GS
|
| |