| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_6613 |
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| Symbol | |
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| ID | 8549030 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haliangium ochraceum DSM 14365 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013440 |
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| Strand | + |
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| Start bp | 9067193 |
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| End bp | 9069139 |
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| Gene Length | 1947 bp |
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| Protein Length | 648 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 646391273 |
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| Product | selenocysteine-specific translation elongation factor |
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| Protein accession | YP_003270972 |
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| Protein GI | 262199763 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG3276] Selenocysteine-specific translation elongation factor |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00475] selenocysteine-specific elongation factor SelB
[TIGR00485] translation elongation factor TU |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0913819 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACTGCCC CGCCCCGACG CTCGCTCATC CTCGGCACCG CCGGGCACAT CGACCACGGC
AAGACCGCCC TGGTCAAAGC CCTCACCGGC GTGGATACCG ACCGCCTGTC CGCCGAAAAA
GAGCGCGGCA TCACCATCGA GCTCGGCTTC GCCCACCTGG CCCTGGGGCC GCTGTCGTGC
GGCGTGGTCG ACGTCCCCGG CCACGAGCGC TTCATCAAAT CCATGGTCGC CGGCGCCGGC
GGTATCGACG TGGTCTGCCT GGTCATCGCC GCCGACGAGG GCATCATGCC GCAGACCCGC
GAGCACCTCG ACGTGTGCGA GCTGCTGGGC GTGCGCCGCG GCGTGGTCGC GCTGACCAAG
TCCGACCTGG TCGACGTCGA GTGGCAGGAG CTGATGCGCG AGGAAGTGCG CGAGGGCCTG
GCCGCGAGCT TTCTGCGCGA GGCCGCGATC GTGCCGGTGT CGGCGCGCAC GGGCGCCGGC
CTCGATGCCC TGCGCCAGGC CTTGCAGCAG CAGGCCGAAG CCGTGGTCGA ACGCCCCGCC
GGCGGCGTCT TCCGCCTGCC GCTCGACCGC GTCTTCACCA TGCGCGGCTT TGGCACCGTG
GTCACCGGCA GCGCGCTCGG CGGTGTCGTA CGCGTGGGCG AAAACCTCGT CGTCCACCCG
CGCGGCACCG AGGCCAAGGT GCGCGGCATC CAGGTCCACG GCGAGGCCCG CGACAGCGCC
GAGGCCGGCA TGCGCTGCGC GCTCAATCTC TCCGGCGTGG CGCGCGAGGA GCTGCGCCGC
GGCGACATCC TGGCGCTGCC GGACGCGGTC GCGCCCTCGC ACATCCTCGA CACCCGCTTC
CGCTACCTGG CCAGCAACAA GTCCGCGCTG CCGCGGCGCT CGCAGGTGCT CGTGCACCAC
GGCACCGCCC AGCTCATGGG CACGCTGGTG CTGGTCGACG CCGAGTCGCT GGCGCCCGGC
GAAGAGGGCC TGGTGCAGGT GCGCATCGAC GCCCGCGAGG CCCTGGCCGC GCTGCCGGGC
GATCGCTTCA TCGCGCGCGG ATTCGTGCCC CTCGAGCACT ACGGCACCAC CATCGGCGGC
GGCGAGATCG TGCGCGTGCA GGCGCCCAAG GTGCGCCGCG CCACGCGCGC CGAGGGCGCC
GACACCCTGC GCCGCATGGC CGAGGCCTCG CTCGCGCAGC GCATCGCGCT CGAGGTCCGC
GCGGCCGCGC ACGCCAGCCC GGACAGCGGC GAGCTCGGCC GCCGCCTGGG ACTCGAGGCC
GCCGCGCTCG CCGCCGCCCT CGAACGCCTG GTGCAGACCG GCGAGCTGGT CGCCGCCGGC
GAGGGCGAGG AGCGCGTGTA CTGTCACGCC GAGATCTTCG CCGCCATGGA GCAGCAGGCG
CTCGGCCACC TGCGCGCGTT TCACGAGGCC AACCCGGGGC GCGAGGGCAT GAGCCGGCAA
GAGCTGCGCA CGCGCTTGCC CGCGGCGCTT CCCGGACGCA TGTACGAACT CGTGCTGAAC
GCGCTGGTGC AGCGCGGCGC GATCGCGGCC GAGGCCGACC TGGTGCGCCG CATCCAGGGC
CGGGCGCAAG CGGCGGGCGC GATGCTCACG CCCATCGAGC GCGACATCGT CGAGGCCTTT
CGCGGCTGGG GGCTCACGCC CAAGCGGCCC AAGGAGGTGC CCGAGGCGCT CGGCCTCGAT
GTCAACGCCG TGCGCCCGGC GCTCGAGCGC CTGCTGCAGC GCGGGCTGCT GGTGCGCGTG
CGCTCGGATC TCTACGTCGA CGCCGCGGCC ATCGCCGAGC TGCGCCAGCG GCTCGAGGCC
TATCTCGACG CCGAGGGCGA AATCGCGGCG CCGGCGTGGA AGACCATCAC CGGGACCTCG
CGCAAATACG CCATCCCGCT GGCCGAGTAC TTCGACGCGC AGAAGCTCAC CCTGCGCATC
GGCGATATCC GCAAACGCCG CGGCTGA
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| Protein sequence | MTAPPRRSLI LGTAGHIDHG KTALVKALTG VDTDRLSAEK ERGITIELGF AHLALGPLSC
GVVDVPGHER FIKSMVAGAG GIDVVCLVIA ADEGIMPQTR EHLDVCELLG VRRGVVALTK
SDLVDVEWQE LMREEVREGL AASFLREAAI VPVSARTGAG LDALRQALQQ QAEAVVERPA
GGVFRLPLDR VFTMRGFGTV VTGSALGGVV RVGENLVVHP RGTEAKVRGI QVHGEARDSA
EAGMRCALNL SGVAREELRR GDILALPDAV APSHILDTRF RYLASNKSAL PRRSQVLVHH
GTAQLMGTLV LVDAESLAPG EEGLVQVRID AREALAALPG DRFIARGFVP LEHYGTTIGG
GEIVRVQAPK VRRATRAEGA DTLRRMAEAS LAQRIALEVR AAAHASPDSG ELGRRLGLEA
AALAAALERL VQTGELVAAG EGEERVYCHA EIFAAMEQQA LGHLRAFHEA NPGREGMSRQ
ELRTRLPAAL PGRMYELVLN ALVQRGAIAA EADLVRRIQG RAQAAGAMLT PIERDIVEAF
RGWGLTPKRP KEVPEALGLD VNAVRPALER LLQRGLLVRV RSDLYVDAAA IAELRQRLEA
YLDAEGEIAA PAWKTITGTS RKYAIPLAEY FDAQKLTLRI GDIRKRRG
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