Gene Hoch_6553 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHoch_6553 
Symbol 
ID8548970 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaliangium ochraceum DSM 14365 
KingdomBacteria 
Replicon accessionNC_013440 
Strand- 
Start bp8997448 
End bp8998596 
Gene Length1149 bp 
Protein Length382 aa 
Translation table11 
GC content66% 
IMG OID646391215 
Product4-hydroxyphenylpyruvate dioxygenase 
Protein accessionYP_003270914 
Protein GI262199705 
COG category[E] Amino acid transport and metabolism
[R] General function prediction only 
COG ID[COG3185] 4-hydroxyphenylpyruvate dioxygenase and related hemolysins 
TIGRFAM ID[TIGR01263] 4-hydroxyphenylpyruvate dioxygenase 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.0196689 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.290688 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCGATA AGGAATCTCT GGGAATTCAG CAGCTCGAGG CAATCCACTA CTACGTGCAC 
GACATCGAGC GCAGCCGGCG TTTCTACACC GAGCTGATGG GATTTGCCGA GCTGGGGCGC 
TCGGGCGACG CGCTCGAGAA GCAGGGCAAT CAGACCTCGC GTCTGTTCGC GGCCAACGAC 
TGCCGGGTGC TGGTGTCGGC GCCGCTCAAT GAGCGCTCGC GCGCGGCCCG CTTTCTGCGC 
AAGCACCCCG ACGGCGTGGG CACGCTGATC TTCCGCGTCG AGGACATCGA GCGCACCTTC 
AAGCTGCTCG ACGAGCGCGG CGGCACGCCG ATCGACGAGA TCCACCACTG CGAGGACGGC 
AGCATGTCGT TCTTCTCGAT CACCACACCC TTTGGCGACA CCACCTTCCG CTTCGTGCAG 
CGCAAAAAAG ACGGCCCCTT CCTGCCCGGC TTCGAGCACT ACGAGACGCC GCGCGGCGGT 
GACAACCCCT ACCGCTTCTC GCACATCGAC CACATCACCT CGAACTTCCA GACCATGAGC 
CCGGCGCTGC TGTGGATGGA GCACGTGCTC GGCTTCGAGC GCTACTGGAA GGTCGAGTTC 
CACACCCGCG ACGTCGCCCA GGACGAGGGC CACACCGGCT CGGGCCTGCG CTCGGTGGTC 
ATGTGGGACC CGAAGTCGGG CGTGAAATTC GCCAACAACG AGCCCATGCG GCCGTTCTTC 
AAGAACTCGC AGATCAACCT GTTCAACGAG GACCACCGCG GCGACGGCGT GCAGCACGCG 
GCCCTGGCGG TCGAGGACAT CGTCCCCTGC GTGCGCGGCC TGCGCGCCGC TGGCGTGCAG 
TTCATGCCGA CCCCGGGCGC CTACTACGAC GCCCTGCCCG AGCGCATCCA GAGCAGCGGT 
ATCGGACACA TCGACGAAGA CGTCTCGCTG CTGCGCGAGC TCGAGATCCT CATCGACGGC 
GAGGCCGATC ACGCCTACCT GCTGCAGATC TTCCTGGCCG ATTCGGCGTC GATGTACAAG 
GAGCCCGAGA GCGGCGCGTT CTTCTTCGAG ATCATCCAGC GCAAGGGCGA CGACGGCTTC 
GGCGCCGGCA ACTTCCGCGC CCTGTTCGAG AGCATCGAGC GCCAGCAGAT CGCCGAGAGG 
GCTCTGTGA
 
Protein sequence
MADKESLGIQ QLEAIHYYVH DIERSRRFYT ELMGFAELGR SGDALEKQGN QTSRLFAAND 
CRVLVSAPLN ERSRAARFLR KHPDGVGTLI FRVEDIERTF KLLDERGGTP IDEIHHCEDG 
SMSFFSITTP FGDTTFRFVQ RKKDGPFLPG FEHYETPRGG DNPYRFSHID HITSNFQTMS 
PALLWMEHVL GFERYWKVEF HTRDVAQDEG HTGSGLRSVV MWDPKSGVKF ANNEPMRPFF 
KNSQINLFNE DHRGDGVQHA ALAVEDIVPC VRGLRAAGVQ FMPTPGAYYD ALPERIQSSG 
IGHIDEDVSL LRELEILIDG EADHAYLLQI FLADSASMYK EPESGAFFFE IIQRKGDDGF 
GAGNFRALFE SIERQQIAER AL