| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_5631 |
|---|
| Symbol | |
|---|
| ID | 8548045 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | + |
|---|
| Start bp | 7728785 |
|---|
| End bp | 7731196 |
|---|
| Gene Length | 2412 bp |
|---|
| Protein Length | 803 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 646390299 |
|---|
| Product | 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family-like protein |
|---|
| Protein accession | YP_003270001 |
|---|
| Protein GI | 262198792 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1807] 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.669475 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAACAAGT CCTCGTCCGA CAAGCCGGCC GCGCGCACCG CCGCCGACGG CGACCTCGGT
GACGCGGCCG AGCTCTCGGA GCCGGCAGCG CTCACCCCCT CGCAACCGTT CCTCCACTCG
CGCGGCGCTA GCTGGTTCGA GCTGAGCCTG GCCACGCTGC TGGCCATGGT CATCCTGCTG
CCCGGCTTGT GGTCCTACAC CCTGGTCGAT CCCTGGGAGA CGCACTACGC CGAGGTCGCC
CGGCACATGC TGGAAGGCCA TGACTTCGTC CACACCAAGT GGCAGGACGA GGGCTTCCGC
TCCAAGCCCG TGCTCACCTT CTGGATGATC GCGGGCGGTC TCCGAGCCCT GGGTCTGGGT
GCCGACGGCG GCTTCTCGGG CGAGATGGTG TCGAGCCCGA TGGTGATGTT CGCGGTGCGC
TTGCCGTTCG CGCTCTTCGC CGTCCTCGGC CTGGTCATGA CCTTCTGGAT GCTGTCGCGC
CTGGTGAGTC GCCGGACCGC GTGGTTGGGT CTGCTGGTCA CCTCGACGAC GCCGTTCTTC
TTGCTGGTGG GCCGACAAGC CATCACCGAC ATCCCCATGG TCGCGTGCCT CATGGGCTCG
CTGGCGTGCT TCGCCATGGC CGTACACGCG GGCGACTCGC CGCTGCGCGC CATCGCGCGC
ATACGCGGCC GCGAGATCAA CGCCTTCCAC CTCTTCCTGG CCGTGCTGGT GGCCTTGATC
GGCTGGCAGC TCGCCTACTA CGCCTACTAC TTCGCCGCGT ATCCCAAGCT CGCCGCCGGC
ATCCGCGTGC CGGTGCCCTA CCTGCTGCTG CCCGGCGGCA TGCTGCTCGG CCTGGTCGGA
TTCCTGGTGT GGTCGATCCG CATCTCGCCC ACGCGCTACG CGCGCCAAGT GTACATGTAC
TGGTTCTACG CCCTGCTGGC CGTGAGCGTG CTCGGCAAAG GCCTGCCCGG CATCGGCCTG
GCCGGGCTGG TGTGCTTCTT CTACCTGCTA CTCACCGGCC AGTGGCGCTT GCTCGCCAAA
GTCGAGATCC CGCGCGGCAT CCTGCTGTGC CTGCTGATCG CCGTGCCCTG GCACCTGGCC
ATGCTGTTCA AAGATGGCCG CCCCTTCCTG CGCGATTACT TCCTTATCCA CCTGTGGCGA
CGCGCAGCCT TCGGCGTGCA CGGTGAGCGC GGCACCTTCA ACTTCTTCCT CTCGCAGATC
GGCATCGGCA TGTGGCCGTG GGTGGCGCTG CTGCCGGCCG CCGTCGGCGA CATCCTCAGC
CGCATCACCG GGCGCACGCG AGCCGGTGGC GTGCGCCTGC TCATCGCCAT CTGGGCCGTG
GTCAGCGTCG GCTTCTTCGT CGCGGTGCAG ACCAAGTTCC ACCACTACAT CCTGCCGGCG
GTGCCCGCGC TGGCCCTGCT CGTGGCCTTT TGGCTCGACG ATGTGCTCGC CGGCCGGGTG
CGCAACGTAA CCATCGCCGC GCTGGCCGGC GCCGCCATCG CGCTGCTGCT GGCGCGCGAC
CTCATGGGCG AGCAGAAGCA GCTCATCGAG CTGTTCATCT ACCGCTATGA CCGCCCCTGG
CCGAGCGGTG CGCCCTGGTT CGTCGACGCC TCGGACGCCT TCCTCGGCTT TGGCCTGGCC
TTCGCCGGCA GCCTGCTCGC GTTCGCGTTC CCGCGCCTGC GCCGCGTCGG CATGCTCGCT
CTGGGCACCA GCGCGCTCGT GTTCGCGCTG TGGGTGAGCA ACGTCTACAT GCACCACGCG
GCCACCCACT GGGGCATGCG CGAGGCCATC CAGAGCTACT ACCAGCAGCG CCAGATCCAC
GGCATCGACA TCCGCTACCA CGGCGCCCGG CAGATCGCCG ACGAGTGGGA CGGTCACGAC
GGCAGCTTCC TCATCCGCTC GTTGATCCCC GATCACCTCA GCGTCGGCCA GCCCATGAGC
GTGCGCGTCG AGCTCGCCGA GACCGGCGGC GAGGTCCAGG TCGAGCGCGA ACTGCACGGT
ACGGTCGAGC GCATCGCGGC CGCCGAGAAC CGCTTCTGGG TGGCGCTCGC GCCCGAGGAG
TTGGCCAAGC TCGACGAGCT AGTGGCCCGC GGACGCGGCG AGTCCGAGCC CGAGCAGCGT
CCGCAGCGGC AGGTCAATGC CGACCGCCTC ATCGCCTGGC AGCTCTACTG GCGCGGCGAG
AACTTCTGGA GCGGCGGCGA GATCTGGGGC CCCTTCGCCG CCACCAAGAC CGCCTTCAAA
GACACTGACA ACAAGGCGTT CCTGCAATAC CTCAACACCG AGGGCATCCC GGGCCAGCGC
TACTACCTGG TAACCGAAGC GGGACGCGCG TCCGGTTTGC GCGGCGTCTT GCCGACCCCG
CAAGCCAAAG ACAGCTTCGA GATCCTCAAC ACCAGCTCGA ACAAGTTCAC GCTGCTCAGC
TTCGTGCTGT GA
|
|---|
| Protein sequence | MNKSSSDKPA ARTAADGDLG DAAELSEPAA LTPSQPFLHS RGASWFELSL ATLLAMVILL
PGLWSYTLVD PWETHYAEVA RHMLEGHDFV HTKWQDEGFR SKPVLTFWMI AGGLRALGLG
ADGGFSGEMV SSPMVMFAVR LPFALFAVLG LVMTFWMLSR LVSRRTAWLG LLVTSTTPFF
LLVGRQAITD IPMVACLMGS LACFAMAVHA GDSPLRAIAR IRGREINAFH LFLAVLVALI
GWQLAYYAYY FAAYPKLAAG IRVPVPYLLL PGGMLLGLVG FLVWSIRISP TRYARQVYMY
WFYALLAVSV LGKGLPGIGL AGLVCFFYLL LTGQWRLLAK VEIPRGILLC LLIAVPWHLA
MLFKDGRPFL RDYFLIHLWR RAAFGVHGER GTFNFFLSQI GIGMWPWVAL LPAAVGDILS
RITGRTRAGG VRLLIAIWAV VSVGFFVAVQ TKFHHYILPA VPALALLVAF WLDDVLAGRV
RNVTIAALAG AAIALLLARD LMGEQKQLIE LFIYRYDRPW PSGAPWFVDA SDAFLGFGLA
FAGSLLAFAF PRLRRVGMLA LGTSALVFAL WVSNVYMHHA ATHWGMREAI QSYYQQRQIH
GIDIRYHGAR QIADEWDGHD GSFLIRSLIP DHLSVGQPMS VRVELAETGG EVQVERELHG
TVERIAAAEN RFWVALAPEE LAKLDELVAR GRGESEPEQR PQRQVNADRL IAWQLYWRGE
NFWSGGEIWG PFAATKTAFK DTDNKAFLQY LNTEGIPGQR YYLVTEAGRA SGLRGVLPTP
QAKDSFEILN TSSNKFTLLS FVL
|
|---|
| |