Gene Hoch_5627 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHoch_5627 
Symbol 
ID8548041 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaliangium ochraceum DSM 14365 
KingdomBacteria 
Replicon accessionNC_013440 
Strand
Start bp7724143 
End bp7726446 
Gene Length2304 bp 
Protein Length767 aa 
Translation table11 
GC content69% 
IMG OID646390297 
ProductFHA domain containing protein 
Protein accessionYP_003269999 
Protein GI262198790 
COG category[T] Signal transduction mechanisms 
COG ID[COG1716] FOG: FHA domain 
TIGRFAM ID[TIGR01352] TonB family C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.201198 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCGGAG CCAGAGTGCC CATAACCTTT CGCATCTACA AGGGCGATAC CTTCGTCCGC 
GAAGAGACCC TCACCCAGCC GGTCATCAAG GTCGGCAAGC TCTCTTCGTC TCACCTGCGT
CTCGACGATG ACGCGGTCAG CCGCATGCAC GCGGTCATCG AGGTCTCGGG TCCCGGCGAT
GTGAGCATCA TCGATCTCGG CTCGACCAAA GGGACCCACG TCAACGGCCA GAAGATCAAC
AAGGCCAAGT TGCAGTCCGG CGATCAGATC TCCGTGGGCA ACACGCGCCT CGAGATCGCC
ATCGCCGGCG CGAGCGATGA AGAGGAAGAC GCGCCGACGC GGGTGCACGA CGTCAACGGC
ATGAACGCCC GCGCGGCGGC TGCGCCCGCG AGCTCGCCGG CCGCGGCTCC GCCCACGCCG
GCGCGCCCGG CTCCGGCGGG TCGTCCGGCG GCGGCTCCGG CGCGTCCGGC TCCGGCGCGT
CCGGCTCCGG CCCCGGCCGC GGCTCCGGCG CGTCCCGCGC CCGCCCCGAT GGCGGCCCCG
GCGGCAGCGC CTGCCCCCAT GGCACAGAGC ACGGCCGCTG CGGCTGCTGC TCCGCCCGCC
TTCGGCGCCA ATGCCAGCGC CGGCGACGCC AGCGGCGCCC GCGCCATCGA GATCGCCGCC
ATGCTGGGCG ATTCGGTCGT CGGCGTGAAG CATCTGCTCA ACCCGAAGAG CGGCAAGATC
ACGCCCATGA CCTACGGTCT CTTCATCGGC GGCGGAATTC TGCTGTTGTT GGGCTTCATC
GCCTTCTTCT TCGGTGTCGA GGTCGCGGCC TTCAACAAGG TCGCCCACCA CGAGTGGGTG
CACGACCTCA AGCGCCCGGA GTTCGAGTTC TTCCAGCTAC ATGAGAAGAA GCTCAACCCG
GTGTTCGACT GGATGGCCTT CGGCGGCATG CTCTTCGGCA CGGTGGCGAT GTCCTTCGGC
CTCGTCCGCC TGCGCAACGA GAAGCAGTCT CCCTACTTCC GCATCGGTTC GGCCCCCGAG
GTCGAGTTCC CCTTCGATCC CGCGCCCGTG GCCGCGTTCC CGCTGGTCGG CCCGCGCGGC
GACGAGTTCG TCTTCAACTT CGCCGCGGGT ATGGACGGCG AGATGATGGT CGAGGGCGAG
ACCATTCCGC TGGCCGAGCT GCAGGGCAAA GGTCGCGCTC AGCCCGCTGC CGATCTCGCG
GGAACCGTGC AGGTGCCGAT TCCGGCCAAG GCGCGCATCC GCGTCAACGC CGGCAAGAGC
ACCTTCCTCA TCTCCTCGGT GCCGCGTCCC AAGCGTCTGG CCGCGCCGCT CTTTGCCGCG
CTCGAGAGCC GGGTGCTGAT GTTCTTCGCC GCCTCGGCGC TGTTCCACTT CGGACTGATC
GCGGTGCTGC TCAACCTCCC GCCCGACCCG CGCTCGTTGT CGCTGGCGCT GGGCAACAAC
GAGAACCGCC TGACGCGCTT CCAATCGAAG GCGCAGGAGG ATCCCAAGCA GGAGGAGGAA
GAGGAAGAGG CCAGCGACGT CGCCTCGGGT GGCACGGGTA CGGCCATGGC CCTCGACGAG
GGCAAGATGG GCAAAGAGGA TTCGACCCGC GCCACCGGCC AGTTCGCGAT GAAGAACGAG
GACGCCGCCG ATCCCCAGCT CGCTCGCGAG CAGGCGATGG AGCAAGCTCG TAACGCCGGT
GTGCTGGGTT CGATCAAAGC CATGCAGGGC GGCGCGTTCG CCTCACTGAC CGGTACCGGC
GACTTCGCGT CGGGTCTCGA TGACGCCAAC GTGTACGGCG GTCTGCTCGG CGACGAGGTC
GGCGAGATGC AGGGTGGCTT CGGCTTCGGT CGCTCGGGCT TCGGCCCCGG CGGTGGCGGC
GACGGCTGGG GCACGGTCGG CACTGGTCAG TACGGCACCA TCGGGCACGG TTCGGGTACG
GGCTCGGGCT ACGGCGCGGG TTCGGGCCGC GGCGGTATGC GCAACCGGCG CGCCTCGCCG
CCCGAGGTGC GGATCGGCAA CGCGGTCGCC ACCGGTGACC TCGATAAGAA CATCATCCGC
CGCTACATCC GCCGCAAGCT GCCGCAGATC ACCTACTGCT ACGAGAAGCA GCTCCTGGTG
CGCTCCGACC TCTCGGGCAC TGTGGTCACG CAGTTCCAGA TCAGCCCGCA GGGGGTGGTG
CTCAACTCCA AGGCCGACGG CGTGAGCAAG GAGGTGTCGA GCTGCGTGGC GACCGTCATG
CAGAGCATCA CCTTCCCGAA GCCCAAGGGC GGCGGTCTGG TGCAGGTGCG CTACCCGTTC
ACCTTCCGTC CCTCGGGCGG CTGA
 
Protein sequence
MAGARVPITF RIYKGDTFVR EETLTQPVIK VGKLSSSHLR LDDDAVSRMH AVIEVSGPGD 
VSIIDLGSTK GTHVNGQKIN KAKLQSGDQI SVGNTRLEIA IAGASDEEED APTRVHDVNG
MNARAAAAPA SSPAAAPPTP ARPAPAGRPA AAPARPAPAR PAPAPAAAPA RPAPAPMAAP
AAAPAPMAQS TAAAAAAPPA FGANASAGDA SGARAIEIAA MLGDSVVGVK HLLNPKSGKI
TPMTYGLFIG GGILLLLGFI AFFFGVEVAA FNKVAHHEWV HDLKRPEFEF FQLHEKKLNP
VFDWMAFGGM LFGTVAMSFG LVRLRNEKQS PYFRIGSAPE VEFPFDPAPV AAFPLVGPRG
DEFVFNFAAG MDGEMMVEGE TIPLAELQGK GRAQPAADLA GTVQVPIPAK ARIRVNAGKS
TFLISSVPRP KRLAAPLFAA LESRVLMFFA ASALFHFGLI AVLLNLPPDP RSLSLALGNN
ENRLTRFQSK AQEDPKQEEE EEEASDVASG GTGTAMALDE GKMGKEDSTR ATGQFAMKNE
DAADPQLARE QAMEQARNAG VLGSIKAMQG GAFASLTGTG DFASGLDDAN VYGGLLGDEV
GEMQGGFGFG RSGFGPGGGG DGWGTVGTGQ YGTIGHGSGT GSGYGAGSGR GGMRNRRASP
PEVRIGNAVA TGDLDKNIIR RYIRRKLPQI TYCYEKQLLV RSDLSGTVVT QFQISPQGVV
LNSKADGVSK EVSSCVATVM QSITFPKPKG GGLVQVRYPF TFRPSGG