| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_5625 |
|---|
| Symbol | |
|---|
| ID | 8548039 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | - |
|---|
| Start bp | 7722378 |
|---|
| End bp | 7723268 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 646390296 |
|---|
| Product | Tetratricopeptide TPR_2 repeat protein |
|---|
| Protein accession | YP_003269998 |
|---|
| Protein GI | 262198789 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG4235] Cytochrome c biogenesis factor |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.158114 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCTCAA TGGTTCTCGC CCTCGCCCTC ATCGCCGGGG CGGTCTCTCT ACTTCCCGCT
TGCACCGACG AGCAGCTTCG CCTCTCCATC GAACAGATGA ACGAGGGCAT CATGGCCTTC
GATACGAGCG CGGCTGCAAC GGCACGGCAA CACTTCGAGG AAGCGGTCGG GACCTATCCC
GACAATCACG CCGCCTGGTA CTACCTGGGC GTTGCCGCGC GTGAGCAGAA CGACCTCGAG
AAAGCATCCG AGGCGTTCGC CGAGGCCGTC AAGATCAAGA AAGACGAGCC GATGTATCAG
ATGATGCTCG GTATCTCGCT CTATGATCAG GAGAAGTACT CGCTCGCCGA GGCCTATCTC
GCCAAAGCGG TCGAGCTCGA GTCGCGTCTG CATCGCGCTC ACTGGCACCT CGGCAGCATC
TTCGCCGAGA GCGATCGTCC CGAGGAGGCT GCGCAGCACT GGACGCAAGC GGCCAAAGAG
AACCCGTCGT GGGGTCAGCC CTTCGTGAGC TTGGGCCGGC TGTATCTGCG CTGGGATATG
ATCGAAGAGG CCATCGCCGT GCTCGAGCAG GGTGGGCAGT CGGTGGCCAA CGATGGCCTG
CCCGACGTCT ACTACTACTT GGGCATGGCC TACGACGCGC AGAAGAACTG GGACAAGGCG
GTCGACGCGT ACACGCAGTC GATCGACGCG TCGACCGCGG CCAACAGCGA CAACGTCGAG
GCCAAATTTC AGCGCGCCCT GATTCTCGTC CGCCAGGGCG AAAACGAGAA GGCCATCGTC
GACCTGGAGG AGGTGTCCAA GGCCAGCCCC GACCCCTTCA CCAAGCAAGA GGCCAACCGA
GCTCTGATGG AGCTCACCGT CGATAAAGAA GAGCCGCCCG CGGAAGAGTA G
|
|---|
| Protein sequence | MRSMVLALAL IAGAVSLLPA CTDEQLRLSI EQMNEGIMAF DTSAAATARQ HFEEAVGTYP
DNHAAWYYLG VAAREQNDLE KASEAFAEAV KIKKDEPMYQ MMLGISLYDQ EKYSLAEAYL
AKAVELESRL HRAHWHLGSI FAESDRPEEA AQHWTQAAKE NPSWGQPFVS LGRLYLRWDM
IEEAIAVLEQ GGQSVANDGL PDVYYYLGMA YDAQKNWDKA VDAYTQSIDA STAANSDNVE
AKFQRALILV RQGENEKAIV DLEEVSKASP DPFTKQEANR ALMELTVDKE EPPAEE
|
|---|
| |