| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_5571 |
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| Symbol | |
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| ID | 8547985 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haliangium ochraceum DSM 14365 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013440 |
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| Strand | - |
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| Start bp | 7647616 |
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| End bp | 7649238 |
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| Gene Length | 1623 bp |
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| Protein Length | 540 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 646390244 |
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| Product | PAS/PAC sensor signal transduction histidine kinase |
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| Protein accession | YP_003269946 |
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| Protein GI | 262198737 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.982003 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAGACG AGACGCACGA TCCTCAGAGT GAACATCCCT TCGCCGGTTT CGATGGCCGC
TATCGCGCGA TTTTCGAGTA TGCGCCGGTG TCGTTCTGGG AAGAGGATTT CACCGAGGTG
GTGGCCGCGA TCGACGAGAT GCGGGCGGCC GGGGTCTCGG ACTTTGCCGC GCACTTCGCC
GAGAATCCGC AGGTGGTGCA GGAGCTGGCG GAGAAGACCC AGATTCTGGC GGTCAACGCC
ATCTCGCCGA AGATGTTCGG AGCGCGCAGC AAGGACGAGC TGCTCGGCTC GCTCGACAAG
GTGTTCCTGC CCGAGACCTA TCCCGCCTTC GCCGAGCAGA TGCTGGCGCT GGCCAACGGC
AAGTCGCACT TCGCCTCGGA GGCGTTCGCC GGGACGCTCT CGGGCGGGCG CATCTACACG
CTGTTCAGTG TGACCATGCT GCCGGTACGG CCGGGCGGCG AGCGCCACGG TCTGGTCACG
ATTCAGGATA TCTCGTGGCG CAAGCGCGTC GAGGACGAGC AGGCGGCGCA GGAGAAGCTG
TACCGCACGC TGCTCGAGTC GATTCCGCAC ATGATCTGGA TGGCCGATGG TGAGGGCGAG
GTGCACTTCG GCAACGCGGC CCTGCGCACG GCGGCGCGGC GCACGCTTGC GGAGCTGGTC
GGCAGCGACT GGCTGGATCT CGTCCAGCCG GACGAGCGCG AGGAACTGGA GGCCCTGCGC
AGTACGGCGC GCGATCGCGC GATCGCGTAT CGCGGCGCGT TCCGCTACCG CGCTCGCGAC
GGCGCACACC GGGCCATGTA CTTCATCGAG ACGCCCGTGA AAGACGAGGC CGGCGAGGTC
GTCCACTGGG TCGGAATCAG TACTGACATC ACTGAGCTGG AGGGCGCGCG AGCCGAGATT
CAGACTGCGC TCGAGCGCTC CAATCGCGAG CTGGCCCAGA TCGCGCACGC CGCGTCGCAC
GATCTCGTCG AGCCGCTGCG CATGATCACG AGCTACTCCG AGCTGCTGCA GCGGCGCCGC
GTCGGCCAGT TGGACGAAAA GACCATTCGC TACACCAACT ATATGGTCGA GGGCGCGGCG
CGCATTCGCC AGCTCATCGA CGATCTCGGC GCGCTCTCGA GTATCAGCCA GGAGGCCCAG
CAGCCGCGAC CGGTGCCGCT CGGCGAGGTG CTCGACGAGG TCCAGCAGGT GCTGGCCGAG
CCGATGCGCG ACAGCGGCGC GGAGCTGGTC CACGGCGAGC TGCCCGAGGT GCTGGCCGAC
AGGCACCATC TGGCCCAGTT GTTTCGCATG CTGTTCGACA ACAGCCTCAA GTTCCGCAGC
GCCGATCCCC CGCGCATCGA GGTTTCGGGT CACCGCGACG GCACGATGCA GGTGCTCGCG
GTGCGCGACA ACGGCAAGGG CTTCGACAGC GAGCAGTACG GGGCGCGCAT CTTCGGTATG
TTCCAGCGCT TGCAAGGGCG CGAGGAGTAT CAGGGCACCG GTATCGGCCT GGCGCTGGCG
CGCAAGATCG TCGAGCGCAG CGGCGGCCGC ATCTGGGTCG AGTCGAGCCC GGGGGCGGGC
GCGACCTTCT TCTTCACGCT GCCCGCGGTA CCGACCGAGC TGCTCGCGCC GCCCGAGGTG
TGA
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| Protein sequence | MEDETHDPQS EHPFAGFDGR YRAIFEYAPV SFWEEDFTEV VAAIDEMRAA GVSDFAAHFA
ENPQVVQELA EKTQILAVNA ISPKMFGARS KDELLGSLDK VFLPETYPAF AEQMLALANG
KSHFASEAFA GTLSGGRIYT LFSVTMLPVR PGGERHGLVT IQDISWRKRV EDEQAAQEKL
YRTLLESIPH MIWMADGEGE VHFGNAALRT AARRTLAELV GSDWLDLVQP DEREELEALR
STARDRAIAY RGAFRYRARD GAHRAMYFIE TPVKDEAGEV VHWVGISTDI TELEGARAEI
QTALERSNRE LAQIAHAASH DLVEPLRMIT SYSELLQRRR VGQLDEKTIR YTNYMVEGAA
RIRQLIDDLG ALSSISQEAQ QPRPVPLGEV LDEVQQVLAE PMRDSGAELV HGELPEVLAD
RHHLAQLFRM LFDNSLKFRS ADPPRIEVSG HRDGTMQVLA VRDNGKGFDS EQYGARIFGM
FQRLQGREEY QGTGIGLALA RKIVERSGGR IWVESSPGAG ATFFFTLPAV PTELLAPPEV
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